View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_21 (Length: 317)
Name: NF7139_low_21
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 3702471 - 3702187
Alignment:
| Q |
20 |
tttcaaacacttgatcaaataatccatatcatccaaatgcaaggtagtagcggtccatcgggataaaggcatcctcttctaccagctcttcctgcaattt |
119 |
Q |
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| T |
3702471 |
tttcaaacacttgatcaaataatccatatcatccaaatgcaaggtagtagcggtccatcgggataaaggcatcctcttctaccagctcttcctgcaattt |
3702372 |
T |
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| Q |
120 |
gctggaacagtaagaattttgctaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcaggcccgtccccatttgatcattga |
219 |
Q |
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| T |
3702371 |
gctggaacagtaagaattttgccaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcaggcccgtccccatttgatcattga |
3702272 |
T |
|
| Q |
220 |
acaaatttctggtggcaaagttctcacaatgtttactcacacaactcatctcgtaaatcttgacatgcctttccaagcagggtct |
304 |
Q |
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| T |
3702271 |
acaaatttctggtggcaaagttctcacaatgtttactcacacaactcatctcctaaatcttgacatgcctttccaagcagtgtct |
3702187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 3717181 - 3717062
Alignment:
| Q |
20 |
tttcaaacacttgatcaaataatccatatcatccaaatgcaaggtagtag-cggtccatcgggataaaggcatcctcttctaccagctcttcctgcaatt |
118 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||| | | || |||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
3717181 |
tttcaaacactcgatcaaataatccatatcatccaactgcaaggtagtggccagttcatcaggataaaggcatactc--ctaccagctcttcctgcaatt |
3717084 |
T |
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| Q |
119 |
tgctggaacagtaagaattttg |
140 |
Q |
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| T |
3717083 |
tgctggaacaataagaattttg |
3717062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 3705757 - 3705689
Alignment:
| Q |
50 |
atccaaatgcaaggtagtagcg-gtccatcgggataaaggcatcctcttctaccagctcttcctgcaat |
117 |
Q |
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| T |
3705757 |
atccaaatgcaaggtagtagcaagtccatcaggataaaggcatcctcttctatcagatcttcctgcaat |
3705689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 3713791 - 3713740
Alignment:
| Q |
89 |
catcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttg |
140 |
Q |
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| T |
3713791 |
catcctcttccaccagcacttcctgcaatttgctggaacagtaagaattttg |
3713740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 3708513 - 3708327
Alignment:
| Q |
20 |
tttcaaacacttgatcaaataatccatatcatccaaatgcaaggtagtagcg-gtccatcgggataaaggcatcctcttctaccagctcttcctgcaatt |
118 |
Q |
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||||||||||| ||||| ||| || |||||| ||||||||||| || | | |||||||| |||||||||||||||||| ||| ||||||| ||||| | |
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| T |
3708513 |
tttcaaacactctatcaagtaaatcaaatcatctaaatgcaaggttgtggtgagtccatcgagataaaggcatcctcttcaaccggctcttcttgcaaat |
3708414 |
T |
|
| Q |
119 |
tgctgg----aacagt-----aagaattttgctaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcag |
196 |
Q |
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|| | | |||| |||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
3708413 |
aacttgtgacaccagtacacgaagaattttgtcaccattgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcag |
3708327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 3713693 - 3713608
Alignment:
| Q |
223 |
aatttctggtggcaaagttctcacaatgtttactcacacaactcatctcgtaaatcttgacatgcctttccaagcagggtctctgcttc |
311 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||||||||| | ||||| |||| | |||||||||||||||| |||||| |
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| T |
3713693 |
aatttctggtggcaaa--tctcataatgttg-ctcacacaactcatctcctgtatcttaacatacatttccaagcagggtctttgcttc |
3713608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 3520209 - 3520411
Alignment:
| Q |
20 |
tttcaaacacttgatcaaataatccatatcatccaaatgcaaggtagtagcg-gtccatcgggataaaggcatcctcttctaccagctcttcctgcaatt |
118 |
Q |
| |
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||||||||||| |||||| ||||||| ||| || |||||||| ||||| ||| ||||||||||||||| |||||||||| |||||||||||| |||||| |
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| T |
3520209 |
tttcaaacactcgatcaagtaatccaaatcctctaaatgcaaagtagtggcgagtccatcgggataaacacatcctcttcgaccagctcttccggcaatt |
3520308 |
T |
|
| Q |
119 |
t--------------gctggaacagtaagaattttgctaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcaggcccgtcc |
204 |
Q |
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| T |
3520309 |
tgcttaacctgtgacgctggaacaggaagaattttgtcaccgttgtactttgaaaggttattaaaaatcacccttcgaatgttaaggttaaggcccatcc |
3520408 |
T |
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| Q |
205 |
cca |
207 |
Q |
| |
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||| |
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| T |
3520409 |
cca |
3520411 |
T |
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