View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7139_low_22 (Length: 313)
Name: NF7139_low_22
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 5432879 - 5433161
Alignment:
| Q |
19 |
atcctagtcttagcatgttctccttcatacacttatcaaaacactatcttgattatcagagactgtagcgaaaacactttattttttg-tcgggatcaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
5432879 |
atcctagtcttagcatgttctccttcatacacttatcaaaacactattttgattatcagagactgtagcgaaaacacttttttttttggtcgggatcaat |
5432978 |
T |
|
| Q |
118 |
gtgttctttcgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5432979 |
gtgttctttcgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgt |
5433078 |
T |
|
| Q |
218 |
ctccttcaacactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaatgcttttgcatggctct |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5433079 |
ctccttcaacactcaatatcgctgcttgaaccgaggcatcatacaccacaacttcataaggattaatgcttttgcatggctct |
5433161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 5446499 - 5446220
Alignment:
| Q |
24 |
agtcttagcatgttctccttcatacactt--atcaaaacactatcttgattatcagagactgtagcgaaaacactttatttttt-gtcgggatcaatgtg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || || ||| ||| ||| ||| ||||| || ||||||| || |
|
|
| T |
5446499 |
agtcttagcatgttctccttcatacactttgatcaaaagactatcttgattatcacaggctatagagaatacattttcctttttcgtagggatcatagta |
5446400 |
T |
|
| Q |
121 |
ttctttcgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctc |
220 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| | |||||||||||||||||| ||| |||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
5446399 |
ttctttggaatcaaaacagacatgacaccacctttagtttcaacaccaagactaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctc |
5446300 |
T |
|
| Q |
221 |
cttcaacactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaatgcttttgcatggctct |
300 |
Q |
| |
|
||||| | ||||||||||||||||||| | ||| |||| ||||| |||||| || ||||||||||||||| |||||| |
|
|
| T |
5446299 |
cttcagtattcaatattgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctct |
5446220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University