View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_27 (Length: 300)
Name: NF7139_low_27
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 24809618 - 24809897
Alignment:
| Q |
1 |
ttacctatagtttgtaacaaagtaatgaagaaaaagagcaatttgaaggcgagctagctcagctccaggacaaaatctagcacctcctccaaagggtgca |
100 |
Q |
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| T |
24809618 |
ttacctatagtttgtaacaaagtaatgaagaaaaagagcaatttgaaggcgagctagctcagctccaggacaaaatctagcacctcctccaaagggtgca |
24809717 |
T |
|
| Q |
101 |
taaaatggactacttctccaatttctcttttccttcataattgagaccataacaattaagaaannnnnnnnngaaatacaagtacaaaattatatatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
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| T |
24809718 |
taaaatggactacttctccaatttctcttttccttcataattgagaccataacaattaagaaa-aaaaatttgaaatacaagtacaaaaat---tatata |
24809813 |
T |
|
| Q |
201 |
cagtattcactaaaatggtatgtggattaacctcattttcaggttccatccatctccaaggattgaaatttttagcttcattgt |
284 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809814 |
cagtattcactaaaatgttatgtggattaacctcattttcaggttccatccatctccaaggattgaaatttttagcttcattgt |
24809897 |
T |
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