View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_33 (Length: 251)
Name: NF7139_low_33
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_33 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 38226437 - 38226673
Alignment:
| Q |
15 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
114 |
Q |
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| T |
38226437 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
38226536 |
T |
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| Q |
115 |
ctcagtctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgagttgacaaaaactac |
214 |
Q |
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| T |
38226537 |
ctcagtctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgagttgacaaaaactac |
38226636 |
T |
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| Q |
215 |
aagtaaggattctctgcagtcgacagactttacatac |
251 |
Q |
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| T |
38226637 |
aagtaaggattctctgcagtctacagactttacatac |
38226673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 38214063 - 38214242
Alignment:
| Q |
20 |
acatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
38214063 |
acatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaa |
38214162 |
T |
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| Q |
120 |
tctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgag |
200 |
Q |
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| T |
38214163 |
cctgaaacaaa-aaatccatgttgctcactaaacacccaacaaagtaatggactagttttgtgttttagagttaaattgag |
38214242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 38237976 - 38238120
Alignment:
| Q |
15 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
114 |
Q |
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|||||| ||||||||||||||| | ||||||||||||||||||||||| |||||| ||||| || ||||||||||||| |||||||||||||||||| |
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| T |
38237976 |
agatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgata |
38238075 |
T |
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| Q |
115 |
ctcagtctgaaacaaataaattcatgttgctcactatatacccaa |
159 |
Q |
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| T |
38238076 |
ctcattctgaaacaaagaaaaccatgttgctcactatatacccaa |
38238120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 38242951 - 38243099
Alignment:
| Q |
15 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
114 |
Q |
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| T |
38242951 |
agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgata |
38243050 |
T |
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| Q |
115 |
ctcagtctgaaacaaataaattcatgttgctcactat-atacccaacaa |
162 |
Q |
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|||| ||||||||||| |||| ||||||||||||||| ||||||||||| |
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| T |
38243051 |
ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaacaa |
38243099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 38253304 - 38253470
Alignment:
| Q |
15 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| || |||| |||||| ||||||| || || || ||| ||| |||||||| ||||| ||| |
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| T |
38253304 |
agatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcata |
38253403 |
T |
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| Q |
115 |
ctcagtctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttat |
181 |
Q |
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| T |
38253404 |
ctcaacctgaaacaaagaaatctatgttgctcgcattatacccaacaacttaatggactagtgttat |
38253470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 38220096 - 38220226
Alignment:
| Q |
15 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
114 |
Q |
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| T |
38220096 |
agatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
38220195 |
T |
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| Q |
115 |
ctcagtctgaaacaaataaattcatgttgct |
145 |
Q |
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| T |
38220196 |
ctcaacctgaaacaaagaaatccatattgct |
38220226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 38248165 - 38248316
Alignment:
| Q |
29 |
ccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaaca |
128 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||| ||||||| || | || ||||||| |||||||||||| ||||||||| |||||||| |
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| T |
38248165 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaaca |
38248263 |
T |
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| Q |
129 |
aataaattcatgttgctcactatatacccaacaaagtaatggactagttttat |
181 |
Q |
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| T |
38248264 |
aagaaatctacgttgctcgcaatatacctaacaaactactggactagtgttat |
38248316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 17454528 - 17454708
Alignment:
| Q |
10 |
agcagagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaact |
109 |
Q |
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| T |
17454528 |
agcatagatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaact |
17454627 |
T |
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| Q |
110 |
tgatactcagtctgaaacaaataaattcatgttgctcacta----tatacccaacaaagtaatggactagttttatgtttt |
186 |
Q |
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| T |
17454628 |
tgatactcaatctgaaacaaagaaattcatgttgctcactataattatacccaacaaagaaatgaactgttgttatgtttt |
17454708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 17433449 - 17433600
Alignment:
| Q |
10 |
agcagagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaact |
109 |
Q |
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| T |
17433449 |
agcatagatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaact |
17433548 |
T |
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| Q |
110 |
tgatactcagtctgaaacaaataaattcatgttgctcactat-atacccaac |
160 |
Q |
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| T |
17433549 |
tgatactcaatctgaaacaaagaaatccatgttgctcactataatacccaac |
17433600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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