View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_38 (Length: 240)
Name: NF7139_low_38
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43344156 - 43343933
Alignment:
| Q |
1 |
tttttagttgcatcttgattaatttgtggcctatacttataaaaagcctcgtccaaataaggaggagagaatgcttcaactctagtctcagttggatact |
100 |
Q |
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| T |
43344156 |
tttttagttgcaccttgattaatttgtggcctatacttattaaaagcctcgtccaaataaggaggagagaatgcttcaactctagtctcagttggatact |
43344057 |
T |
|
| Q |
101 |
tatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttaccattaggaagcacagcggaagttgaatgatacattcttgcaatttg |
200 |
Q |
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| T |
43344056 |
tatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttaccattaggaagcacagccgaagttgaatgatacattcttgcaatttg |
43343957 |
T |
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| Q |
201 |
agtaggcatcatcgccttaaacct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
43343956 |
agtaggcatcatcgccttaaacct |
43343933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 33440931 - 33440793
Alignment:
| Q |
55 |
aaataaggaggagagaatgcttcaactctagtctcagttggatacttatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttac |
154 |
Q |
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||||| || ||||| ||| |||||||||||||||||||||| | | ||| ||| || || || ||||||||||| |||||| |||||||| || | |
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| T |
33440931 |
aaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagctacccaaatttttc |
33440832 |
T |
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| Q |
155 |
cattaggaagcacagcggaagttgaatgatacattcttg |
193 |
Q |
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| T |
33440831 |
cattaggaagcaatgctgaagttgaatgatacattcttg |
33440793 |
T |
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