View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7139_low_39 (Length: 229)

Name: NF7139_low_39
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7139_low_39
NF7139_low_39
[»] chr3 (8 HSPs)
chr3 (1-97)||(24358395-24358491)
chr3 (1-88)||(24344461-24344548)
chr3 (5-92)||(24364808-24364895)
chr3 (1-97)||(24313898-24313994)
chr3 (1-88)||(24354733-24354820)
chr3 (173-211)||(24364689-24364727)
chr3 (173-211)||(24369920-24369958)
chr3 (5-57)||(24351652-24351704)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24358395 - 24358491
Alignment:
Q  1 ttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgcagtagaaatagattattcttc 97  Q
    ||||||||||||||||||| ||||||||||||  | ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  24358395 ttggacatggctctttggttgtgtttgaatataaaagaacttccaagtttgatgtacacatttttggccggaatgcagtagaaatagattattcttc 24358491  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24344461 - 24344548
Alignment:
Q  1 ttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgcagtagaaataga 88  Q
    ||||||||||||||||||||||||||||||||  ||||||||| |  |||||||||   ||| |||  ||||||||||||||||||||    
T  24344461 ttggacatggctctttggtggtgtttgaatataaaggaacttcgaaatttgatgtagtaatacttggtcggaatgcagtagaaataga 24344548  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 24364895 - 24364808
Alignment:
Q  5 acatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgcagtagaaatagattat 92  Q
    |||||||| ||||||| |||||||||||  ||||||||||| ||||||||||   ||| ||| || ||||||||||||||||||||||    
T  24364895 acatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattat 24364808  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24313898 - 24313994
Alignment:
Q  1 ttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgcagtagaaatagattattcttc 97  Q
    |||||||||| | ||||||  ||||  |||||  ||||||||| | ||||||||||| |||| |||||| ||||||| |||||||||||||||||||    
T  24313898 ttggacatgggtgtttggtaatgttcaaatataaaggaacttcaaagtttgatgtactcatacttgaccagaatgcactagaaatagattattcttc 24313994  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24354733 - 24354820
Alignment:
Q  1 ttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgcagtagaaataga 88  Q
    |||||||||| | ||||||||||||  |||||  ||||  ||| | |||||||||||||||| ||| || ||||||||||||||||||    
T  24354733 ttggacatggttgtttggtggtgttcaaatataaaggagattcaaagtttgatgtacacatacttggccagaatgcagtagaaataga 24354820  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 24364727 - 24364689
Alignment:
Q  173 atggcttaatcggaagaaggctagacaaagatcgccttt 211  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  24364727 atggcttaatcggaagaaggctagacaaagatcaccttt 24364689  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 24369920 - 24369958
Alignment:
Q  173 atggcttaatcggaagaaggctagacaaagatcgccttt 211  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  24369920 atggcttaatcggaagaaggctagacaaagatcaccttt 24369958  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 24351652 - 24351704
Alignment:
Q  5 acatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtac 57  Q
    |||||| | ||||||||||||| |||||  ||||||||||| |||||||||||    
T  24351652 acatggatgtttggtggtgtttaaatataaaggaacttccaagtttgatgtac 24351704  T

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