View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_40 (Length: 228)
Name: NF7139_low_40
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_40 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 7655506 - 7655698
Alignment:
| Q |
19 |
tgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaa |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
7655506 |
tgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacggacagtccacgtggcatttcatcaa |
7655605 |
T |
|
| Q |
119 |
ttcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatggaattcaacgacctat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7655606 |
ttcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaacgacctat |
7655698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 7637820 - 7637625
Alignment:
| Q |
19 |
tgttggctgttcaagtcacagagctagttgacggcatcttcattggctt-taatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatca |
117 |
Q |
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||||||| |||||||| || |||||||||||||| || |||||||| | | |||| ||||||||||| | |||||| ||||| |||||||||||||| |
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| T |
7637820 |
tgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgttgacggaaagtccgtgtggcatttcatca |
7637722 |
T |
|
| Q |
118 |
attcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaatggaattcaacgacctat |
211 |
Q |
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|||| ||||||||||| |||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||| |
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| T |
7637721 |
attcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggcctat |
7637625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 7615985 - 7615805
Alignment:
| Q |
19 |
tgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaa |
118 |
Q |
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||||||| |||||||| || |||||||||||||| || || ||||| | |||||||||||||| | |||||| |||| ||||||||||||||| |
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| T |
7615985 |
tgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaa |
7615886 |
T |
|
| Q |
119 |
ttcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaatgg |
196 |
Q |
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||| ||||||||||| |||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
7615885 |
ttcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatgg |
7615805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 7606989 - 7606801
Alignment:
| Q |
19 |
tgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaa |
118 |
Q |
| |
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|||||||||||||| | || |||||||||||||| || |||||||| | |||||||||||||| | |||||| ||||| ||||||||||||||| |
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| T |
7606989 |
tgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaa |
7606890 |
T |
|
| Q |
119 |
ttcgtgggctgaaatgtcacgtggttgtcatc---atcaaatatctaactccccaacgctagagcgttggtttccaaatggaattcaac |
204 |
Q |
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||| ||||||||||| ||||| |||||| | |||||||||| || ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
7606889 |
ttcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaac |
7606801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 7629374 - 7629186
Alignment:
| Q |
19 |
tgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaa |
118 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||| ||||| | | |||||||||||||| | |||||| ||||| ||||||||||||||| |
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| T |
7629374 |
tgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatttcatcaa |
7629275 |
T |
|
| Q |
119 |
ttcgtgggctgaaatgtcac---gtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatggaattcaac |
204 |
Q |
| |
|
||| ||||||||||| |||| || |||||||||||||||||||||| | ||||| || ||||||||||||||||| ||||||| |
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| T |
7629274 |
ttcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaac |
7629186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 8910532 - 8910709
Alignment:
| Q |
19 |
tgttggctgttcaagtcacagagctagttgacggcatcttcattggctt-taatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatca |
117 |
Q |
| |
|
||||||| |||||||| || |||||||||||||| || |||||||| | | |||| ||||||||||| | |||||| ||||| |||||||||||| | |
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| T |
8910532 |
tgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgttgacggaaagtccgtgtggcatttcatta |
8910630 |
T |
|
| Q |
118 |
attcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaa |
193 |
Q |
| |
|
|||| ||||||||||| |||||| ||||| ||| ||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
8910631 |
attcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa |
8910709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 190
Target Start/End: Original strand, 8935552 - 8935641
Alignment:
| Q |
104 |
gtggcatttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttcc |
190 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||| | ||||| ||||| ||||||||||| |
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| T |
8935552 |
gtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttcc |
8935641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 8934611 - 8934669
Alignment:
| Q |
104 |
gtggcatttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatat |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| || |||||||||||||||||| |
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|
| T |
8934611 |
gtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatat |
8934669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 40146755 - 40146940
Alignment:
| Q |
19 |
tgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaa |
118 |
Q |
| |
|
|||| ||||| ||||| |||||| ||||||||||| |||||||||| |||| || ||||||| || | |||||| ||||||| |||| |||||| || |
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| T |
40146755 |
tgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaa |
40146854 |
T |
|
| Q |
119 |
ttcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatggaattcaac |
204 |
Q |
| |
|
||| ||||| |||| || ||||||||| ||||| |||| || | ||||||||| ||||||||||||| ||| ||||||| |
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|
| T |
40146855 |
ttcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaac |
40146940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 8103218 - 8103105
Alignment:
| Q |
30 |
caagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaattcgtgggctg |
129 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||| |||| ||| |||||||| || | ||| || || | ||| ||||||| ||||||||||||| |
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|
| T |
8103218 |
caagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatggtatttcattaattcgtgggctg |
8103119 |
T |
|
| Q |
130 |
aaatgtcacgtggt |
143 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
8103118 |
aaatctcacgtggt |
8103105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 6501249 - 6501119
Alignment:
| Q |
30 |
caagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagtccacgtggcatttcatcaattcgtgggctg |
129 |
Q |
| |
|
||||| |||||| |||||| ||| |||| ||||| |||| ||||||||||| || ||| || |||||| ||||||||| |||| ||| ||||||| |
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| T |
6501249 |
caagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggctg |
6501150 |
T |
|
| Q |
130 |
aaatgtcacgtggttgtcatcatcaaatatc |
160 |
Q |
| |
|
|||| |||||||||||| | |||||||||| |
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|
| T |
6501149 |
aaatttcacgtggttgttgtaatcaaatatc |
6501119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 5099 - 5071
Alignment:
| Q |
105 |
tggcatttcatcaattcgtgggctgaaat |
133 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
5099 |
tggcatttcatcaattcgtgggctgaaat |
5071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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