View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_44 (Length: 205)
Name: NF7139_low_44
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 2592466 - 2592637
Alignment:
| Q |
15 |
cagagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgat |
114 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592466 |
cagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgat |
2592565 |
T |
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| Q |
115 |
tgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2592566 |
tgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggccaagtgg |
2592637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 2624012 - 2624181
Alignment:
| Q |
17 |
gagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattg |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624012 |
gagaaattagtccaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattg |
2624111 |
T |
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| Q |
117 |
ctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
186 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
2624112 |
ctgttttggataagggaagtgttgttgagaatggaacacattcatccttgttgtctaaagggccaagtgg |
2624181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 2440520 - 2440691
Alignment:
| Q |
15 |
cagagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgat |
114 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2440520 |
cagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactattcaaaactgtgatttgat |
2440619 |
T |
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| Q |
115 |
tgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
186 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2440620 |
tgctgttttggataagggaattgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtgg |
2440691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 2672177 - 2672008
Alignment:
| Q |
17 |
gagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattg |
116 |
Q |
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||||||||||| ||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
2672177 |
gagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtagcacataggttgagtactatacaaaattgcgatttgattg |
2672078 |
T |
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| Q |
117 |
ctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
186 |
Q |
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||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2672077 |
ctgttttagacaagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtgg |
2672008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 2596363 - 2596206
Alignment:
| Q |
15 |
cagagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgat |
114 |
Q |
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||||||||||||| ||||| |||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
2596363 |
cagagaaattagtccaagatactttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgat |
2596264 |
T |
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| Q |
115 |
tgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttatct |
172 |
Q |
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|||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
2596263 |
tgctgtcttggataagggaattgttgttgagaaaggaacacattcgtctttgttatct |
2596206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 2568802 - 2568631
Alignment:
| Q |
17 |
gagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattg |
116 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2568802 |
gagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattg |
2568703 |
T |
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| Q |
117 |
ctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtggtg |
188 |
Q |
| |
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|||||||||||||||| | |||| |||||||||||||||||||| ||| || || |||||||||||||||| |
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| T |
2568702 |
ctgttttggataagggcattgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtg |
2568631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 2451242 - 2451413
Alignment:
| Q |
15 |
cagagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgat |
114 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| ||| ||| ||||||| ||||| |||||||| || ||||||||||||||||| ||||| |||||| |||| |
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| T |
2451242 |
cagagaagttagtgcaagatgctttagaaagggttatgattggaagaacaagtgtggttgtggctcataggttgagtactatacaaaattgtgatatgat |
2451341 |
T |
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| Q |
115 |
tgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttatctaaagggccaagtgg |
186 |
Q |
| |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
2451342 |
tgttgttttggataagggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtgg |
2451413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 2641019 - 2640866
Alignment:
| Q |
15 |
cagagaaattagtacaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgat |
114 |
Q |
| |
|
||||||||||||| ||||| ||||||||| || ||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
2641019 |
cagagaaattagtgcaagatgctttagaaagagttatggttggaaggacaagtgtagttgtcgcacataggttgagtactatacaaaattgtgatttgat |
2640920 |
T |
|
| Q |
115 |
tgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgtt |
168 |
Q |
| |
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|||||||||||||||||| | |||| |||| ||||||||||||||||||||||| |
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|
| T |
2640919 |
tgctgttttggataaggggattgttgttgaaaaaggaacacattcatctttgtt |
2640866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 17870186 - 17870107
Alignment:
| Q |
44 |
aaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtgatttgattgctgtttt |
123 |
Q |
| |
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||||| |||||||||||||| || |||||||||||||||||||||||||| || || || |||||| | ||||||||||| |
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| T |
17870186 |
aaggtaatggttggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
17870107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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