View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7139_low_45 (Length: 204)
Name: NF7139_low_45
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_45 |
 | |
|
| [»] scaffold0092 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 27079047 - 27078887
Alignment:
| Q |
31 |
tctgattgttttctatcatttaaaaaagataatggatggagtgaattcaagtatttaacaaagtgtaatagatac-atatttcttttttgatcctcctcc |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
27079047 |
tctgattgttttcaatcatttaaaaaagataatggatggagtgaattcaagtatttaacaaagtgtaatagatacaatatttattttttgatgctcctcc |
27078948 |
T |
|
| Q |
130 |
ttcaaatccgaataccattcctttgagtgcagttgacaatcatcctgttatctttcctatg |
190 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
27078947 |
ttcaaatctgaatacccttcctttgagagcagttgacaatcatcctgttatctctcctatg |
27078887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 27084844 - 27084684
Alignment:
| Q |
31 |
tctgattgttttctatcatttaaaaaagataatggatggagtgaattcaagtatttaacaaagtgtaatagatac-atatttcttttttgatcctcctcc |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
27084844 |
tctgattgttttcaatcatttaaaaaagataatggatggagtgaattcaagtatttaacaaagtgtaatagatacaatatttattttttgatgctcctcc |
27084745 |
T |
|
| Q |
130 |
ttcaaatccgaataccattcctttgagtgcagttgacaatcatcctgttatctttcctatg |
190 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
27084744 |
ttcaaatctgaatacccttcctttgagagcagttgacaatcatcctgttatctctcctatg |
27084684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 21082704 - 21082744
Alignment:
| Q |
48 |
atttaaaaaagataatggatggagtgaattcaagtatttaa |
88 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
21082704 |
atttaaaaaagataatggatgaagtgaattcaaatatttaa |
21082744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 32345277 - 32345222
Alignment:
| Q |
44 |
tatcatttaaaaaagataatggatg-gagtgaattcaagtatttaacaaagtgtaa |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| | ||||||||| |
|
|
| T |
32345277 |
tatcatttaaaaaagataatggatgagagtgaattcaaatattaacaaaagtgtaa |
32345222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 32361885 - 32361830
Alignment:
| Q |
44 |
tatcatttaaaaaagataatggatg-gagtgaattcaagtatttaacaaagtgtaa |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| | ||||||||| |
|
|
| T |
32361885 |
tatcatttaaaaaagataatggatgagagtgaattcaaatattaacaaaagtgtaa |
32361830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 31555657 - 31555606
Alignment:
| Q |
44 |
tatcatttaaaaaagataatggatg-gagtgaattcaagtatttaacaaagt |
94 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| || ||||| |
|
|
| T |
31555657 |
tatcatttaaaaaagataatggatgagagtgaattcaaatattaaagaaagt |
31555606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 6589 - 6643
Alignment:
| Q |
44 |
tatcatttaaaaaagataatggatg-gagtgaattcaagtatttaacaaagtgta |
97 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| |||| || |||||||| |
|
|
| T |
6589 |
tatcatttaaaaaagataatgcatgagagtgaattcaaatattaaaaaaagtgta |
6643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 22701715 - 22701760
Alignment:
| Q |
44 |
tatcatttaaaaaagataatggatg-gagtgaattcaagtatttaa |
88 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
22701715 |
tatcgtttaaaaaagataatggatgagagtgaattcaaatatttaa |
22701760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University