View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_47 (Length: 201)
Name: NF7139_low_47
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 35161235 - 35161425
Alignment:
| Q |
3 |
caatgttaactttagagatagagatagagaataaagcaaaa-aagaatttacctgaaggctaaaacggtataatgaagtaacctaaaac------atata |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35161235 |
caatgttaactttagagatagagatagagaataaagcaaaaaaagaatttacctgaaggctaaaacggtataatgaagtaacctaaaacatagatatata |
35161334 |
T |
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| Q |
96 |
tactcatcatcattatattagataatcctcgctcatcgcgttttgagagttgannnnnnncttcgttttctatcgctccctcgttcgttct |
186 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35161335 |
tagtcatcatcattatattagataatcctccctcatcgcgttttgagagttgatttttttcttcgttttctatcgctccctcgttcgttct |
35161425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 40915633 - 40915572
Alignment:
| Q |
32 |
aataaagcaaaaaagaatttacctgaaggctaaaacggtataatgaagtaacctaaaacatat |
94 |
Q |
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||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
40915633 |
aataaagcaaaaa-gaatttacctgaaggctaaaatggtaaaatgaagtaacctaaaacatat |
40915572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 39839561 - 39839625
Alignment:
| Q |
32 |
aataaagcaaaaaagaatttacctgaaggctaaaacggtataatgaagtaacctaaaacatatata |
97 |
Q |
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||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
39839561 |
aataaagcaaaaat-aatttacctgaaggctaaaatggtaaaatgaagtaacctaaaacatatata |
39839625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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