View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_5 (Length: 460)
Name: NF7139_low_5
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 54 - 448
Target Start/End: Complemental strand, 46132383 - 46131967
Alignment:
| Q |
54 |
tatgcctcttagattgtacacaccagtgatcatatacaagtgtgcaacaataattactctatgaaatatatgttaaataaaataaagagcagaaccgatc |
153 |
Q |
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| T |
46132383 |
tatgccttttagattgtacacaccagtgatcatatacaagtgtgcaacaataattactctatgaaatatatgttaactaaaataaagagcagaaccgatc |
46132284 |
T |
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| Q |
154 |
acacagggagcaaatataacatatacaaat----------------------gtaatgttactatatgtaagacagctatctgttgaatataggaataac |
231 |
Q |
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| T |
46132283 |
acacagggagcaaatataacatatacaaatatattttttcttttctctcattgtaatgttactatatgtaagacagctatctgttgaatataggaataac |
46132184 |
T |
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| Q |
232 |
atggaaacctagtcatctacggtttctcttcagctatagcttcaaggtcctcaggaaaatatgtcttcaaaatgtacaccgccatgttacagctttgcaa |
331 |
Q |
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| T |
46132183 |
atggaaacctagtcatctacggtttctcttcagctatagcttcaaggtcctcaggaaaatatgtcttcaaaatgtacaccgccatgttacagctttgcaa |
46132084 |
T |
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| Q |
332 |
tcttttaatcttatccaatcctgcacactctttaatcttatccttgtaaatttctcctgcctttaaaatgttatacagcccagtcagacaaagtcccagc |
431 |
Q |
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| T |
46132083 |
tcttttaatcttatccaatcctgcacactctttaatcttatccttgttaatttctcctgcctttaaaatgttatacagcccagtcagacaaagtcccagc |
46131984 |
T |
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| Q |
432 |
atatccgcgtctgtgct |
448 |
Q |
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| T |
46131983 |
atatccgcgtctgtgct |
46131967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 46705371 - 46705244
Alignment:
| Q |
184 |
gtaatgttactatatgtaagacagctatctgttgaatataggaataacatggaaacctagtcatctacggtttctcttcagctatagcttcaaggtcctc |
283 |
Q |
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| T |
46705371 |
gtaatgttagtatatgtaagacagctaactgttcaatataggaataacatggaaacctagtcatctacggtttctcttgagctatagcttcaaggtcccc |
46705272 |
T |
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| Q |
284 |
aggaaaatatgtcttcaaaatgtacacc |
311 |
Q |
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| T |
46705271 |
aggaaaatatgtctccaaaatgtacacc |
46705244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46132500 - 46132445
Alignment:
| Q |
1 |
cctattagagaaaattgaatagcaaatagaatagaaatctatacttcaaactctat |
56 |
Q |
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| T |
46132500 |
cctattagagaaaattgaatagcaaatagaatagaaatctatacttcaaactctat |
46132445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 46126416 - 46126336
Alignment:
| Q |
368 |
cttatccttgtaaatttctcctgcctttaaaatgttatacagcccagtcagacaaagtcccagcatatccgcgtctgtgct |
448 |
Q |
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| T |
46126416 |
cttatccttgttaatttctcctgcctttaaaatgtttttcagcccagtcagacaaagtgtcagcatagtcgcgtctgtgct |
46126336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 46705414 - 46705372
Alignment:
| Q |
57 |
gcctcttagattgtacacaccagtgatcatatacaagtgtgca |
99 |
Q |
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| T |
46705414 |
gcctcttagattgttcacaccagtgatcatatacaagtgtgca |
46705372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 46126498 - 46126452
Alignment:
| Q |
322 |
agctttgcaatcttttaatcttatccaatcctgcacactctttaatc |
368 |
Q |
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| T |
46126498 |
agctttgcaatcttgcaatcttatccaatcctgcacactcttcaatc |
46126452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 46705145 - 46705060
Alignment:
| Q |
368 |
cttatccttgtaaatttctcctgcctttaaaatgtt------atacagcccagtcagacaaagtcccagcatatccgcgtctgtgc |
447 |
Q |
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||||||||||| |||||||||||||||||||||||| | |||||||||||||||| || |||||||| ||||||||||| |
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| T |
46705145 |
cttatccttgttaatttctcctgcctttaaaatgtttttcagtttcagcccagtcagacaacgttccagcatagacgcgtctgtgc |
46705060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 46705513 - 46705475
Alignment:
| Q |
18 |
aatagcaaatagaatagaaatctatacttcaaactctat |
56 |
Q |
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| T |
46705513 |
aatagcaaatagcagagaaatctatacttcaaactctat |
46705475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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