View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_6 (Length: 459)
Name: NF7139_low_6
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 20689073 - 20689506
Alignment:
| Q |
14 |
aggcctcgtgtcacttccggcttggagagcgggaagaagtggatgatttaacacagtaccgtatctctcatggaaatgatcagcaacttttttccgagtt |
113 |
Q |
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| T |
20689073 |
aggcctcgtgtcacttccggcttggagagcgggaagaagtggatgctttaacacagtaccgtatctctcatggaaatgatcaacaacttttttccgagtt |
20689172 |
T |
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| Q |
114 |
actttgtcatcaagcatgaaccttaaccgataacaaattacaaacaaaatgaagagtgatatcaagcctaaagttgttaaaataaagcttagccaaggag |
213 |
Q |
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| T |
20689173 |
actttgtcatcaagcatgaaccttaacggataacaaattacaaacaaaatgaagagtgatatcaagcctaaagttgttaaaataaagcttaggcaaggag |
20689272 |
T |
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| Q |
214 |
gacacaacacctttccctcaagtagataagtagcctatttaagcattacacattagacacaatttactccaacgtctaaggaataactaaaatggtaaag |
313 |
Q |
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| T |
20689273 |
gac---acacctttccctcaagtagataagtagccta---------tacacattagacacaatttactccaacgtctaaggaataactaaaatggtaaag |
20689360 |
T |
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| Q |
314 |
aaaataaagttactcacgttaggtctctgagtggctcttttgagacaccggtcaccttgtaactccttatgatctctccgcgagagaatcttaccttaag |
413 |
Q |
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| T |
20689361 |
aaaataaagttactcacgttaggtctctgagtggctcttttgagacaccggtcaccttgtaactccttatgatctctccgcgagagaatcttaccttaag |
20689460 |
T |
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| Q |
414 |
acctctcaaggctttcgtgatctgaaacaaagtaaaaaatatattc |
459 |
Q |
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| T |
20689461 |
acctctcaaggctttcgtgatctgaaacaaagtaaaaaatatattc |
20689506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 438
Target Start/End: Original strand, 20664716 - 20665136
Alignment:
| Q |
14 |
aggcctcgtgtcacttccggcttggagagcgggaagaagtggatgatttaacacagtaccgtatctctcatggaaatgatcagcaacttttttccgagtt |
113 |
Q |
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| T |
20664716 |
aggcctcgtgtcacttccagcttggagagcaggaagaagtggatactgtaacacaatttcatatttctcatagaaataatcagatatttttttccgagtt |
20664815 |
T |
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| Q |
114 |
actttgtcatcaagcatgaaccttaaccgataacaaattacaaacaaaatgaagagtgatatcaagcctaaagttgttaaaataaagcttagccaaggag |
213 |
Q |
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| T |
20664816 |
acttggtcatcaagcttgaacctaaatggataacaaatta----------gaagagtgaaatcaagcctaaagttgtaaaaataaaggttagtcatggac |
20664905 |
T |
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| Q |
214 |
gacacaacacctttccctcaagtagataagtagcctatttaagcattacacattagacacaatttactccaacgtctaaggaataactaaaatggtaaag |
313 |
Q |
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| T |
20664906 |
tatacaac---ttgcccccaagcagatcagtaacctttgtaagtatcacagattacgcgcaatttactccaaccttaaagggatcactaaaatggtaagg |
20665002 |
T |
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| Q |
314 |
---------aaaataaagttactcacgttaggtctctgagtggctcttttgagacaccggtcaccttgtaactccttatgatctctccgcgagagaatct |
404 |
Q |
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|||| |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||| |
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| T |
20665003 |
gaaaaaaaaaaaaaaaagttgctcacattagatctctgaggggctcttttgagacaccggtcaccttgtaactccttatgttacctccgtgagatgttct |
20665102 |
T |
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| Q |
405 |
taccttaagacctctcaaggctttcgtgatctga |
438 |
Q |
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| T |
20665103 |
taccctaatacctctcaaggctttcttgatctga |
20665136 |
T |
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