View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7139_low_8 (Length: 449)

Name: NF7139_low_8
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7139_low_8
NF7139_low_8
[»] chr5 (4 HSPs)
chr5 (98-241)||(36758403-36758549)
chr5 (103-233)||(36759140-36759271)
chr5 (163-238)||(16291329-16291405)
chr5 (133-234)||(5123724-5123827)
[»] scaffold0146 (2 HSPs)
scaffold0146 (103-239)||(29922-30058)
scaffold0146 (103-239)||(32264-32400)
[»] chr2 (11 HSPs)
chr2 (15-97)||(41847263-41847350)
chr2 (93-241)||(42683461-42683610)
chr2 (134-207)||(4425914-4425988)
chr2 (259-298)||(1483373-1483412)
chr2 (164-231)||(4424860-4424927)
chr2 (259-298)||(11089010-11089049)
chr2 (265-298)||(4426021-4426054)
chr2 (98-174)||(34456935-34457012)
chr2 (94-159)||(1481052-1481117)
chr2 (93-175)||(40614743-40614827)
chr2 (133-209)||(41474690-41474765)
[»] chr4 (5 HSPs)
chr4 (98-207)||(43036441-43036551)
chr4 (133-204)||(40729880-40729952)
chr4 (114-205)||(50825945-50826037)
chr4 (186-231)||(17291196-17291241)
chr4 (107-175)||(32430493-32430562)
[»] chr7 (7 HSPs)
chr7 (97-207)||(27866811-27866922)
chr7 (98-139)||(47317207-47317248)
chr7 (161-207)||(27543686-27543732)
chr7 (133-185)||(47317776-47317829)
chr7 (164-207)||(18791996-18792039)
chr7 (134-207)||(27543002-27543076)
chr7 (103-155)||(18792653-18792705)
[»] chr8 (6 HSPs)
chr8 (97-236)||(32473085-32473225)
chr8 (98-175)||(20086229-20086307)
chr8 (98-207)||(32472393-32472504)
chr8 (190-230)||(33293128-33293168)
chr8 (210-239)||(20086219-20086248)
chr8 (133-207)||(6253553-6253629)
[»] chr1 (6 HSPs)
chr1 (98-236)||(21761277-21761416)
chr1 (106-232)||(37770202-37770329)
chr1 (103-175)||(18981488-18981561)
chr1 (103-177)||(42486372-42486448)
chr1 (98-141)||(9953149-9953192)
chr1 (164-239)||(27109014-27109090)
[»] chr3 (7 HSPs)
chr3 (97-207)||(44006394-44006505)
chr3 (134-239)||(44846992-44847101)
chr3 (192-239)||(44809883-44809930)
chr3 (98-175)||(38108772-38108850)
chr3 (161-203)||(42989867-42989909)
chr3 (103-131)||(17714928-17714956)
chr3 (103-131)||(19016157-19016185)
[»] scaffold0039 (1 HSPs)
scaffold0039 (161-233)||(106825-106898)
[»] chr6 (1 HSPs)
chr6 (98-180)||(16185346-16185429)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 36758403 - 36758549
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatg-cccctgcggtagttaactactgttgaggacccgacagcagt 196  Q
    ||||||||||||| |||||||||||||||||||| ||||  ||| ||||| | ||||| |||| |||||||||||||||||||||||||||| | | |||    
T  36758403 gaaagttgcttttctgacatcaaaagtttcctaaagacaagagtaaaatattaaaatgtccccagcggtagttaactactgttgaggacccggcggtagt 36758502  T
Q  197 taactaccgct--agctccagcggtagttaactaccgctgaattcat 241  Q
    ||||||||| |   |  ||||||||||||||||||||||||||||||    
T  36758503 taactaccgttgaggacccagcggtagttaactaccgctgaattcat 36758549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 36759271 - 36759140
Alignment:
Q  103 ttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccct-gcggtagttaactactgttgaggacccgacagcagttaact 201  Q
    ||||||||||||||| ||||  |||  |  ||||||||| |||||| | ||||||||  ||||||||||||||| |||||||| |||  ||| |||||||    
T  36759271 ttgcttttttgacataaaaaacttcacattgacacaagtaaaatacctgaatgcccccagcggtagttaactaccgttgaggatccggtagccgttaact 36759172  T
Q  202 accgctagctccagcggtagttaactaccgct 233  Q
    |||||| || ||||| ||||||||| ||||||    
T  36759171 accgctggccccagcagtagttaaccaccgct 36759140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 16291329 - 16291405
Alignment:
Q  163 ggtagttaactactgttgaggacccgacagcagttaactaccgctag-ctccagcggtagttaactaccgctgaatt 238  Q
    ||||||||| ||| ||||| || | |||| ||||||||||||||||| | |||||||| ||||||||||||| ||||    
T  16291329 ggtagttaattaccgttgaagatctgacaacagttaactaccgctagacgccagcggttgttaactaccgctaaatt 16291405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 5123724 - 5123827
Alignment:
Q  133 gacacaagtgaaatacttaaatgcc-cctgcggtagttaactactgttgagga-cccgacagcagttaactaccgctagctccagcggtagttaactacc 230  Q
    ||||||||| |||||||||||| || || | ||||||||||| | |||||||| |||| | |||||||||||||| | |  | | |||||||||||||||    
T  5123724 gacacaagtaaaatacttaaatacctccggtggtagttaactgccgttgaggaacccgtcggcagttaactaccgttggtccaaacggtagttaactacc 5123823  T
Q  231 gctg 234  Q
    ||||    
T  5123824 gctg 5123827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 30058 - 29922
Alignment:
Q  103 ttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccct-gcggtagttaactactgttgaggacccgacagcagttaact 201  Q
    ||||||||||||||| |||| ||  | || || |||||| |||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||    
T  30058 ttgcttttttgacataaaaacttcac-aatgatacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccggcagtagttaact 29960  T
Q  202 accgctagctccagcggtagttaactaccgctgaattc 239  Q
    ||||||||  | | ||||||||||||||||||||||||    
T  29959 accgctagtcctaacggtagttaactaccgctgaattc 29922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 32400 - 32264
Alignment:
Q  103 ttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccct-gcggtagttaactactgttgaggacccgacagcagttaact 201  Q
    ||||||||||||||| |||| ||  | || ||||||||| |||||||||||||||||  ||||||||||||||| |||||||||||| ||| ||||||||    
T  32400 ttgcttttttgacataaaaacttcac-aatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggacccggcagtagttaact 32302  T
Q  202 accgctagctccagcggtagttaactaccgctgaattc 239  Q
    ||||||||  | | ||||||||||||||||||||||||    
T  32301 accgctagtcctaacggtagttaactaccgctgaattc 32264  T

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Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 41847350 - 41847263
Alignment:
Q  15 attatgttgtgtccaattcttgtttgatatctcatttatttatgtgt-----catgggttggcagggttgctttcgagattgataaat 97  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||    
T  41847350 attatgttgtgtccaattcttgttcgatatctcatttatttatgtgtaatggcatgggttggcagggttgctttcgagattgataaat 41847263  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 42683461 - 42683610
Alignment:
Q  93 taaatgaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccctgcggt-agttaactactgttgaggacccgaca 191  Q
    |||| |||| ||||||||||||||| ||||  |||  || ||||||| | |||||||||||||||||    |  |||||||| |||||||||||||||||    
T  42683461 taaaagaaaattgcttttttgacataaaaaacttcacaatgacacaaataaaatacttaaatgcccccaatgacagttaactcctgttgaggacccgaca 42683560  T
Q  192 gcagttaactaccgctagctccagcggtagttaactaccgctgaattcat 241  Q
    |||||||||||||| | | | |||||||||||||||||||||||||||||    
T  42683561 gcagttaactaccgttggtttcagcggtagttaactaccgctgaattcat 42683610  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 4425914 - 4425988
Alignment:
Q  134 acacaagtgaaatacttaaatgcccctg-cggtagttaactactgttgaggacccgacagcagttaactaccgct 207  Q
    |||||||| |||||||||||||||||   | ||| |||||||| ||||||||||||||| |||||||||||||||    
T  4425914 acacaagtaaaatacttaaatgcccccaacagtacttaactaccgttgaggacccgacaacagttaactaccgct 4425988  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 1483412 - 1483373
Alignment:
Q  259 taccattccttttctctgtcttcttttcttcttccttttc 298  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  1483412 taccattccttttctctgtcttattttcttcttccttttc 1483373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 4424927 - 4424860
Alignment:
Q  164 gtagttaactactgttgaggacccgacagcagttaactaccgctagctccagcggtagttaactaccg 231  Q
    |||||||||||| |||||||||||| || ||||||||||||||| |  ||| || |||||||||||||    
T  4424927 gtagttaactaccgttgaggacccggcatcagttaactaccgctggtcccaacgatagttaactaccg 4424860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 11089010 - 11089049
Alignment:
Q  259 taccattccttttctctgtcttcttttcttcttccttttc 298  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  11089010 taccattccttttctctgtcttattttcttcttccttttc 11089049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 4426021 - 4426054
Alignment:
Q  265 tccttttctctgtcttcttttcttcttccttttc 298  Q
    ||||||||||||||||||||||||||||||||||    
T  4426021 tccttttctctgtcttcttttcttcttccttttc 4426054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 34456935 - 34457012
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgccc-ctgcggtagttaacta 174  Q
    |||| ||||||||||||||| ||||  ||  ||| ||||||||| |||||||||||||||| | ||||||||||||||    
T  34456935 gaaaattgcttttttgacataaaaaactttataaagacacaagtaaaatacttaaatgccctcagcggtagttaacta 34457012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 1481052 - 1481117
Alignment:
Q  94 aaatgaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccc 159  Q
    |||||||| ||||||||||||||| ||||  ||| ||| ||||||| | |||||||||||| ||||    
T  1481052 aaatgaaaattgcttttttgacataaaaaacttcgtaaagacacaaataaaatacttaaattcccc 1481117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 40614827 - 40614743
Alignment:
Q  93 taaatgaaagttgcttttttgacatcaaaagt-ttcctaacgacacaagtgaaatacttaaatg-cccctgcggtagttaactac 175  Q
    |||| |||| ||||||||||||||| ||||   ||| ||| ||||||||| ||||||||||||| |||| || ||||||||||||    
T  40614827 taaacgaaaattgcttttttgacataaaaaaacttcataaagacacaagtaaaatacttaaatgcccccagcagtagttaactac 40614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 41474765 - 41474690
Alignment:
Q  133 gacacaagtgaaatacttaaatgcccctgcggtagttaactactgttgaggacccgacagcagttaactaccgctag 209  Q
    ||||||||| |||||||||||| |  | || |||||||||||| ||||| |||||| || |||||||||||| ||||    
T  41474765 gacacaagtaaaatacttaaatacttcagcagtagttaactaccgttgatgacccg-caacagttaactaccactag 41474690  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 43036551 - 43036441
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccct-gcggtagttaactactgttgaggacccgacagcagt 196  Q
    |||| ||||||||||||||| ||||  |||  || ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||    
T  43036551 gaaaattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccggcagcagt 43036452  T
Q  197 taactaccgct 207  Q
    |||||||||||    
T  43036451 taactaccgct 43036441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 40729952 - 40729880
Alignment:
Q  133 gacacaagtgaaatacttaaatgcc-cctgcggtagttaactactgttgaggacccgacagcagttaactacc 204  Q
    ||||||||| ||||||||||||||| || |||||| |||||||| ||| |||| ||| |||||||||||||||    
T  40729952 gacacaagtaaaatacttaaatgccaccagcggtatttaactaccgttcaggaaccggcagcagttaactacc 40729880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 50826037 - 50825945
Alignment:
Q  114 acatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccctgc-ggtagttaactactgttgaggacccgacagcagttaactaccg 205  Q
    |||||||||||| |||||  | |||||| ||||||||||||| | || | |||||||||||||| ||||||||| | ||| ||||||||||||    
T  50826037 acatcaaaagttgcctaaaaaaacaagtaaaatacttaaatgtctctaccggtagttaactactattgaggacctggcagaagttaactaccg 50825945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 17291196 - 17291241
Alignment:
Q  186 ccgacagcagttaactaccgctagctccagcggtagttaactaccg 231  Q
    ||||||||||||||||||||| || |||| ||| ||||||||||||    
T  17291196 ccgacagcagttaactaccgcgagatccatcggcagttaactaccg 17291241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 32430493 - 32430562
Alignment:
Q  107 ttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatg-cccctgcggtagttaactac 175  Q
    |||||| |||| ||||  |||||||  ||||| |||||||||||||||| |||| |||||||||||||||    
T  32430493 ttttttaacattaaaaacttcctaaaaacacatgtgaaatacttaaatgtccccagcggtagttaactac 32430562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 27866811 - 27866922
Alignment:
Q  97 tgaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgccc-ctgcggtagttaactactgttgaggacccgacagcag 195  Q
    |||||||||||||| ||| ||||||||| ||||||  |||||||| ||||| |||||||||| | ||||||||||||||| ||||| |||||| ||||||    
T  27866811 tgaaagttgcttttctgaaatcaaaagtctcctaaaaacacaagtaaaatatttaaatgccctcagcggtagttaactaccgttgaagacccggcagcag 27866910  T
Q  196 ttaactaccgct 207  Q
    ||||||||||||    
T  27866911 ttaactaccgct 27866922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 47317207 - 47317248
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47317207 gaaagttgcttttttgacatcaaaagtttcctaacgacacaa 47317248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 27543732 - 27543686
Alignment:
Q  161 gcggtagttaactactgttgaggacccgacagcagttaactaccgct 207  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  27543732 gcggtagttaactactgttgaggatccggcagcagttaactaccgct 27543686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 47317829 - 47317776
Alignment:
Q  133 gacacaagtgaaatacttaaatg-cccctgcggtagttaactactgttgaggac 185  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||    
T  47317829 gacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggac 47317776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 18791996 - 18792039
Alignment:
Q  164 gtagttaactactgttgaggacccgacagcagttaactaccgct 207  Q
    ||||||||||||  |||| |||||||||||||||||||||||||    
T  18791996 gtagttaactaccattgaagacccgacagcagttaactaccgct 18792039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 27543002 - 27543076
Alignment:
Q  134 acacaagtgaaatacttaaatgcc-cctgcggtagttaactactgttgaggacccgacagcagttaactaccgct 207  Q
    |||||||| ||||||||||||||| ||   ||||||||||||| ||| | || ||| ||||||||||||||||||    
T  27543002 acacaagtaaaatacttaaatgcctccaatggtagttaactaccgttcaagaaccgtcagcagttaactaccgct 27543076  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 18792705 - 18792653
Alignment:
Q  103 ttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatg 155  Q
    ||||||||||||||| ||||  ||| ||| ||||||||| |||||||||||||    
T  18792705 ttgcttttttgacataaaaaacttcataaagacacaagtaaaatacttaaatg 18792653  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 32473225 - 32473085
Alignment:
Q  97 tgaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccct-gcggtagttaactactgttgaggacccgacagcag 195  Q
    ||||| ||| ||||||||||| ||||  |||  | |||||||||| ||||||||||||||||   |  |||||||||||| | ||||||||||||| |||    
T  32473225 tgaaaattgtttttttgacataaaaaacttcacatcgacacaagtaaaatacttaaatgccctaagtagtagttaactaccgctgaggacccgacaacag 32473126  T
Q  196 ttaactaccgctagctccagcggtagttaactaccgctgaa 236  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  32473125 ttaactaccgctggccccagtggtagttaactaccgctgaa 32473085  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 20086307 - 20086229
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcc-cctgcggtagttaactac 175  Q
    |||||| | ||||||||||||||||||||||| ||||||||| | ||||||||||||||| || |||||||||||||||    
T  20086307 gaaagtagtttttttgacatcaaaagtttcctgacgacacaaataaaatacttaaatgcctccagcggtagttaactac 20086229  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 32472393 - 32472504
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcc-cctgcggtagttaactactgttgaggacc---cgacagc 193  Q
    ||||||| ||||| ||||||||||||||||||||  | |||||| ||||||| ||||||| || ||||||||||||||| ||||||||||   |||| ||    
T  32472393 gaaagttacttttctgacatcaaaagtttcctaa--agacaagtaaaatactaaaatgcctcccgcggtagttaactaccgttgaggacccaacgacggc 32472490  T
Q  194 agttaactaccgct 207  Q
    |||||| |||||||    
T  32472491 agttaattaccgct 32472504  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 33293128 - 33293168
Alignment:
Q  190 cagcagttaactaccgctagctccagcggtagttaactacc 230  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  33293128 cagcagttaactatcgctagccccagcggtagttaactacc 33293168  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 20086248 - 20086219
Alignment:
Q  210 ctccagcggtagttaactaccgctgaattc 239  Q
    ||||||||||||||||||||||||||||||    
T  20086248 ctccagcggtagttaactaccgctgaattc 20086219  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 6253629 - 6253553
Alignment:
Q  133 gacacaagtgaaatacttaaatg-cccctgcggtagttaactactg-ttgaggacccgacagcagttaactaccgct 207  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| | | ||| | |||||| ||||||||| |||||    
T  6253629 gacacaagtaaaatacttaaatgtcccccgcggtagttaactaccgctagagaaaccgacaacagttaactgccgct 6253553  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 21761277 - 21761416
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccct-gcggtagttaactactgttgaggacccgacagcagt 196  Q
    |||| ||||||||||||||| ||||  |||  |  |||| |||| |||||  ||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  21761277 gaaaattgcttttttgacataaaaaacttcacattgacaaaagtaaaatatctaaatgcccctagcggtagttaactaccgttgaggacccgacatcagt 21761376  T
Q  197 taactaccgctagctccagcggtagttaactaccgctgaa 236  Q
    ||||||||||| || |||| ||| |||| |||||||||||    
T  21761377 taactaccgctggccccagtggtggttatctaccgctgaa 21761416  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 37770202 - 37770329
Alignment:
Q  106 cttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccctg-cggtagttaactactgttgaggacccgacagcagttaactacc 204  Q
    |||||||||||| ||||  |||  || |||||| || |||||||||||||||||   |||||||||||||  |||||||| |||| | ||||||||||||    
T  37770202 cttttttgacataaaaaacttcgcaatgacacacgtaaaatacttaaatgcccccaacggtagttaactatcgttgaggatccgatatcagttaactacc 37770301  T
Q  205 gctagctccagcggtagttaactaccgc 232  Q
    |||  |  || |||||||||||||||||    
T  37770302 gctgacctcaacggtagttaactaccgc 37770329  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 18981488 - 18981561
Alignment:
Q  103 ttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatg-cccctgcggtagttaactac 175  Q
    ||||||||||||||| ||||  ||||||| ||||||||| ||||||||||||| |||| ||| |||||||||||    
T  18981488 ttgcttttttgacataaaaaacttcctaaagacacaagtaaaatacttaaatgtccccagcgatagttaactac 18981561  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 42486372 - 42486448
Alignment:
Q  103 ttgcttttttgacatca-aaagtttcctaacgacacaagtgaaatacttaaatgcc-cctgcggtagttaactactg 177  Q
    |||||||||| |||||| ||| ||||||||  |||||||| ||||||| |||| || ||||||||||||||||||||    
T  42486372 ttgcttttttaacatcataaactttcctaaaaacacaagtaaaatactaaaatacctcctgcggtagttaactactg 42486448  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 9953149 - 9953192
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagt 141  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||    
T  9953149 gaaagttgcttttttgacatcaaaaatttcctaaaaacacaagt 9953192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 27109090 - 27109014
Alignment:
Q  164 gtagttaactactgttgaggac-ccgacagcagttaactaccgctagctccagcggtagttaactaccgctgaattc 239  Q
    |||||||||||| |||||| |  ||| | |||||||||| ||||| |  ||||||||||||||||||||||| ||||    
T  27109090 gtagttaactaccgttgagaaaaccgccggcagttaactgccgctggtcccagcggtagttaactaccgctgtattc 27109014  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 44006394 - 44006505
Alignment:
Q  97 tgaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcccct-gcggtagttaactactgttgaggacccgacagcag 195  Q
    ||||| |||||||| ||||||  ||| ||||  || |||| |||| |||||||||||||||||  ||||||||||||||| ||| |||| ||| ||||||    
T  44006394 tgaaaattgcttttctgacattgaaaatttcacaatgacataagtaaaatacttaaatgcccccagcggtagttaactaccgttcaggaaccggcagcag 44006493  T
Q  196 ttaactaccgct 207  Q
    ||||||||||||    
T  44006494 ttaactaccgct 44006505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 44846992 - 44847101
Alignment:
Q  134 acacaagtgaaatacttaaatgcc-cctgcggtagttaactactgttgaggacccgacagcagttaactaccgctagctccagc---ggtagttaactac 229  Q
    |||||||| |||||||||||| || || ||||||||||||||| ||||||||||    |||| |||||||||||| || |||||    ||||||||||||    
T  44846992 acacaagtaaaatacttaaatacctccagcggtagttaactaccgttgaggacctagtagcaattaactaccgctggccccagctgtagtagttaactac 44847091  T
Q  230 cgctgaattc 239  Q
    ||||||||||    
T  44847092 cgctgaattc 44847101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 44809883 - 44809930
Alignment:
Q  192 gcagttaactaccgctagctccagcggtagttaactaccgctgaattc 239  Q
    |||||||||| |||||||  |||||||| |||||||||||||||||||    
T  44809883 gcagttaactgccgctagacccagcggttgttaactaccgctgaattc 44809930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 38108772 - 38108850
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatgcc-cctgcggtagttaactac 175  Q
    |||| ||||||||||||||  ||||  ||||||  ||||||||| |||||||||||| || || |||||||||||||||    
T  38108772 gaaaattgcttttttgacaataaaaagttcctattgacacaagtaaaatacttaaatacctccagcggtagttaactac 38108850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 42989867 - 42989909
Alignment:
Q  161 gcggtagttaactactgttgaggacccgacagcagttaactac 203  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  42989867 gcggtagttaactaccgttgaggactcgacggcagttaactac 42989909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 17714956 - 17714928
Alignment:
Q  103 ttgcttttttgacatcaaaagtttcctaa 131  Q
    |||||||||||||||||||||||||||||    
T  17714956 ttgcttttttgacatcaaaagtttcctaa 17714928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 19016185 - 19016157
Alignment:
Q  103 ttgcttttttgacatcaaaagtttcctaa 131  Q
    |||||||||||||||||||||||||||||    
T  19016185 ttgcttttttgacatcaaaagtttcctaa 19016157  T

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Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 106825 - 106898
Alignment:
Q  161 gcggtagttaactactgttgaggac-ccgacagcagttaactaccgctagctccagcggtagttaactaccgct 233  Q
    ||||||||||||||| |||||  |  |||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  106825 gcggtagttaactaccgttgacaaagccgacaacagttaactgccgctggcaccagcggtagttaactaccgct 106898  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 16185429 - 16185346
Alignment:
Q  98 gaaagttgcttttttgacatcaaaagtttcctaacgacacaagtgaaatacttaaatg-cccctgcggtagttaactactgttg 180  Q
    |||| |||||||||| |||| ||||| || ||||  |||||| ||||||||| ||||| |||| ||||||||||||||| ||||    
T  16185429 gaaaattgcttttttaacataaaaagctttctaaaaacacaaatgaaatactaaaatgtccccagcggtagttaactaccgttg 16185346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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