View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7139_low_9 (Length: 428)
Name: NF7139_low_9
Description: NF7139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7139_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 165 - 414
Target Start/End: Original strand, 35189624 - 35189874
Alignment:
| Q |
165 |
acactcactcctcaaaccgactaaaccgccaaattcgtccctactttgtaagacgctctacaatagtttcatgatattatgaatatttcaaaaagnnnnn |
264 |
Q |
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| T |
35189624 |
acactcactcctcaaaccgactaaaccgccaaattcgtccctactttgtaagacgctctacaatagttccatgatattatgaatatttcaaaaagttttt |
35189723 |
T |
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| Q |
265 |
nnactccgtcaaaatttacttgtattagtcattttgagagtatgctaggaatcgacactaagtggttgaatagtatagagatcccctaaaataaatagta |
364 |
Q |
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| T |
35189724 |
ttactccgtcaaaatttacttgtattggtcattttgagagtatgctaggaattgacactaagtggttgaatagtatagagatcccctaaaataaatagta |
35189823 |
T |
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| Q |
365 |
tagagaccagattgataataa-ttgttaaaatacaggacctaattgatagt |
414 |
Q |
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| T |
35189824 |
tagagaccagattgataataagttgttaaaatacaggacctaattgatagt |
35189874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 35189466 - 35189563
Alignment:
| Q |
1 |
attgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctggtaa |
98 |
Q |
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| T |
35189466 |
attgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctggtaa |
35189563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 43970830 - 43970925
Alignment:
| Q |
1 |
attgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctggt |
96 |
Q |
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| T |
43970830 |
attgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgatactcaagatgttgctggt |
43970925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1663766 - 1663862
Alignment:
| Q |
1 |
attgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctggta |
97 |
Q |
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| T |
1663766 |
attgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatggcatagatgttgctggta |
1663862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 4791343 - 4791270
Alignment:
| Q |
186 |
taaaccgccaaattcgtccct-actttgtaagacgctctacaatagtttcatgatattatgaatatttcaaaaa |
258 |
Q |
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|||||| ||||||| |||| | |||||||| || || || |||||||||||||| ||||||||||||||||||| |
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| T |
4791343 |
taaaccaccaaattagtccttgactttgtatgatgcacttcaatagtttcatgagattatgaatatttcaaaaa |
4791270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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