View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7140_high_1 (Length: 379)
Name: NF7140_high_1
Description: NF7140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7140_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 2274318 - 2274675
Alignment:
| Q |
17 |
atttaaagttgagattagcttaattgcttaaaaaattacattataaaccattcctaatgccttgcggcgggggcagcaaagaaaatttgaaggagtacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2274318 |
atttaaagttgagattagcttaattgcttaaaaaattacattataaaccattcctaatgccttgcggcgggggcagcaaagaaaatttgaaggagtacat |
2274417 |
T |
|
| Q |
117 |
gccttgtaaggtaaggaaacaaatgacatgttttcattgctcaattatttattgactttacatgtattaattccgcctaaccttccatgaattccgtcat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2274418 |
gccttgtaaggtaaggaaacaaatgacatgttttcattgctcaattatttattgactttacatgtattaattccgcctaaccttccatgaattccgtcaa |
2274517 |
T |
|
| Q |
217 |
acacttacttttcattggttagttgttattcgtgatacttctttcgcaagatatagcaatattgttccctttataataacacttgaatcattaaatagat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2274518 |
acacttacttttcattggttagttgttattcgtgatacttctttcgcaagatatagcaatattgttccctttataataacacttgaataattaaatagat |
2274617 |
T |
|
| Q |
317 |
tattcatctcattagtggttacaattagtctttatctgactttcaaattcatctcact |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
2274618 |
tattcatctcattagtggttacaattagtccttatctgactttcaaattcatttcact |
2274675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University