View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7140_low_6 (Length: 250)
Name: NF7140_low_6
Description: NF7140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7140_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 55156654 - 55156546
Alignment:
| Q |
53 |
cattgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttccca |
152 |
Q |
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| T |
55156654 |
cattgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttccca |
55156555 |
T |
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| Q |
153 |
ttgactcca |
161 |
Q |
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| T |
55156554 |
ttgactcca |
55156546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 54573387 - 54573279
Alignment:
| Q |
53 |
cattgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttccca |
152 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||| |
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| T |
54573387 |
cattgtatcaatgaaatacacaacaaaatattatagtaacttgattggttaaaacaagtacatacacttcaattccggtctttagattatccacttccca |
54573288 |
T |
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| Q |
153 |
ttgactcca |
161 |
Q |
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| T |
54573287 |
ttgactcca |
54573279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 54573244 - 54573205
Alignment:
| Q |
196 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
235 |
Q |
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| T |
54573244 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
54573205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 55156511 - 55156472
Alignment:
| Q |
196 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
235 |
Q |
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| T |
55156511 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
55156472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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