View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7142_high_4 (Length: 339)
Name: NF7142_high_4
Description: NF7142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7142_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 9866350 - 9866052
Alignment:
| Q |
13 |
ataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaagaacatatacatttatagcaaaataataatgataattatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
9866350 |
ataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaagaacatatacatttatagcaaaatgataatgatatttatg |
9866251 |
T |
|
| Q |
113 |
tgaaaaatattgtaggtttaatataatttttataaccaaccgacatcagtcttaacaagcatgagtaataataatgtaccaaaaaagcatgagtaatact |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9866250 |
tgaaaaatattgtaggtttaatataattttt-taaccaaccgacatcagtcttaacaagcatgag---taataatgtaccaaaaaagcatgagtaatact |
9866155 |
T |
|
| Q |
213 |
tggcttnnnnnnnnnnnnnnnnnnntcatggtatggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaa |
312 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9866154 |
tggcttaaaaaaaaaaggc-------catggtatggcgtcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaa |
9866062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 4065163 - 4065088
Alignment:
| Q |
244 |
tatggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaatacggat |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||| |||| |||| | |||||||||||||||||| |
|
|
| T |
4065163 |
tatggcgtcacctcgtgaaattgttcaaagtggttggaagcctcttttagagggacgagttaagttgaatacggat |
4065088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 24184874 - 24184804
Alignment:
| Q |
247 |
ggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccggg--atgggttaagttgaatac |
315 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
24184874 |
ggcatcaccttgtgaaattgttcaaattggttggaagcctcctttagagggatataggttaagttgaatac |
24184804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University