View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7142_low_1 (Length: 595)
Name: NF7142_low_1
Description: NF7142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7142_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Complemental strand, 38935815 - 38935415
Alignment:
| Q |
3 |
tggtgtttttcccctccttctatacccgcctactccttcaatcggcagcggcgatgaaggccactcaattgtgctcattgcaaatgggtcttccatcatg |
102 |
Q |
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| T |
38935815 |
tggtgttcttcccctccttctatacccgcctactccttcaatcggcagcggcgatgaaggccactcaattgtgctcattgcaaatgggtcttccatcatg |
38935716 |
T |
|
| Q |
103 |
ctttccattgtttccatcatctcttgcactgtccttgtcgtaggaaatcgatcccataaccctatcggtgcagcaggaaaaactctcttcttaggttggg |
202 |
Q |
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| T |
38935715 |
ctttccattgtttccatcatctcttgcactgtccttgtcgtaggaaatcgatcccataaccctatcggtgcagcaggaaaaactctcttcttaggttggg |
38935616 |
T |
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| Q |
203 |
actgatggtgtttaatgttgtttgatcttgaaacatggtcaagtttttctcttgcttcaccggtcatggctctgactcgaaggaaatgagtttgtcttga |
302 |
Q |
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| T |
38935615 |
actgatggtgtttaatgttgtttgatcttgaaacatggtcaagtttttctcttgcttcaccggtcatggctctgactcgaaagaaatgagtttgtcttga |
38935516 |
T |
|
| Q |
303 |
taaactcttggaaatcatggaaaggttgagaccaagatttgaggataaagagtgtgccattttgtcttttgagacaaaaatcacaagtatatgaataatt |
402 |
Q |
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| T |
38935515 |
taaactcttggaaatcatggaaaggttgagaccaagatttgaggataaagagtgtgccattttgtcttttgagacaaaaatcacaagtatatgaataatt |
38935416 |
T |
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| Q |
403 |
a |
403 |
Q |
| |
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| T |
38935415 |
a |
38935415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 435 - 579
Target Start/End: Complemental strand, 38935416 - 38935272
Alignment:
| Q |
435 |
tatatatataagtttggaaatgagtgatggaggattctggaaagctcgtgtacaattccactttatagaattttcgagaaccaaatatattatttgtagt |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38935416 |
tatatatataagtttggaaatgagtgatggaggattctggaaagctcgtgtacaattccactttatagaattttcgagaaccaaatatattattcgtagt |
38935317 |
T |
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| Q |
535 |
ggatcacttcaagtcataggatatatagttacaagacgatgtatc |
579 |
Q |
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| T |
38935316 |
ggatcacttcaagtcataggatatatagttacaagacgatgtatc |
38935272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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