View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7142_low_10 (Length: 202)
Name: NF7142_low_10
Description: NF7142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7142_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 40179981 - 40179782
Alignment:
| Q |
1 |
cttatgatgctcttatgtgtggcaatggcaattattatattggtatgaaacaagctaaggagatcttggaagaagccaaaaagaaggactctaagttaat |
100 |
Q |
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| T |
40179981 |
cttatgatgctcttacgtgtggcaatggcagttattatagttatatgacacaagctaaggagatcttggaagaagccaaaaagaaggactctaagttaat |
40179882 |
T |
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| Q |
101 |
cgttgctttgctctaccatatgctcatttttataaattgtaagct---acagaattatgataaggctctcaatttattgactgagatgaaggattatggt |
197 |
Q |
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| T |
40179881 |
cgttgctttgctctaccatatgctca---ttgtagattgtgattttaaacagaattatgataaggctctcaagttattgactgagatgaaggattttggt |
40179785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 38604432 - 38604296
Alignment:
| Q |
61 |
agatcttggaagaagccaaaaagaaggactctaagttaatcgttgctttgctctaccatatgctcatttttataaattgtaagctacagaattatgataa |
160 |
Q |
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| T |
38604432 |
agatcttggaagaagccagaaagaaggattctaagttaatcattgctctgctgtaccattcactcattgttggatattgcaagctacataattttgataa |
38604333 |
T |
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| Q |
161 |
ggctctcaatttattgactgagatgaaggattatggt |
197 |
Q |
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| T |
38604332 |
ggctctcaagttattgactcagatgaagaattttggt |
38604296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 44460967 - 44461103
Alignment:
| Q |
61 |
agatcttggaagaagccaaaaagaaggactctaagttaatcgttgctttgctctaccatatgctcatttttataaattgtaagctacagaattatgataa |
160 |
Q |
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| T |
44460967 |
agatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccatacactcattgttggatattgcaagctagagaaatttgatgg |
44461066 |
T |
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| Q |
161 |
ggctctcaatttattgactgagatgaaggattatggt |
197 |
Q |
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| T |
44461067 |
tgctctcgagttattgactcagatgaaggattttggt |
44461103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 44468500 - 44468636
Alignment:
| Q |
61 |
agatcttggaagaagccaaaaagaaggactctaagttaatcgttgctttgctctaccatatgctcatttttataaattgtaagctacagaattatgataa |
160 |
Q |
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||||||||||| ||||||||||| |||| | |||||||||| || ||||||| ||||||| |||||| || | |||| |||||| |||| | |||| |
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| T |
44468500 |
agatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccatacactcattgttggatattgcaagctagagaaatttgatgg |
44468599 |
T |
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| Q |
161 |
ggctctcaatttattgactgagatgaaggattatggt |
197 |
Q |
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| T |
44468600 |
tgctctcgagttattgactcagatgaaggattttggt |
44468636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 46359766 - 46359825
Alignment:
| Q |
61 |
agatcttggaagaagccaaaaagaaggactctaagttaatcgttgctttgctctaccata |
120 |
Q |
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| T |
46359766 |
agatcttggaagaagccaaaaagcaggattgtaagttaatcattactttgctgtaccata |
46359825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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