View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7142_low_5 (Length: 333)
Name: NF7142_low_5
Description: NF7142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7142_low_5 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 17595235 - 17594936
Alignment:
| Q |
18 |
aatatagaacctggatggttttctttaatatgcacctatgcgccagaaaaatagttggaagatatata--atattgattaaagacaaattatgaagtcct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17595235 |
aatatagaacctggatggttttctttaatatgcacctatgcgccacaaaaatagttggaagatatatataatattgattaaagacaaattatgaagtcct |
17595136 |
T |
|
| Q |
116 |
gagttgtcattaattacttttgaagtatttgaagacatatatcagccctatacataaaagatcaagaatatagaaccttgtcgttaattttcttttgaat |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595135 |
gagttgtcattaattacttttgaagtatttgaa-acatatatcagccctatacataaaagatcaagaatatagaaccttgtcgttaattttcttttgaat |
17595037 |
T |
|
| Q |
216 |
gatgccgcttcagtccttgctgctttgagcatttatccgggttcctttctcgtgacatgattgtatatgatatccgcctgttcacaaggatgactatgat |
315 |
Q |
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||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595036 |
gatgccgcttcggtccttgctgctttgagcatttattcaggttcctttctcgtgacatgattgtatatgatatccgcctgttcacaaggatgactatgat |
17594937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 26902954 - 26903054
Alignment:
| Q |
190 |
accttgtcgttaattttcttttgaatgatgccgcttcagtccttgctgctttgagcatttatccgggttcctttctcgtgacatgattgtatatgatatc |
289 |
Q |
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|||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
26902954 |
accttgtcattaattttcttttgaatggtgccgcttcggtcctcgctgctttgagcatttatccgggttcattcct-----catgattgtatatgatatc |
26903048 |
T |
|
| Q |
290 |
cgcctg |
295 |
Q |
| |
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|||||| |
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|
| T |
26903049 |
cgcctg |
26903054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 12208136 - 12208101
Alignment:
| Q |
264 |
ctcgtgacatgattgtatatgatatccgcctgttca |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12208136 |
ctcgtgacatgattgtatatgatatccgcctgttca |
12208101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 26902913 - 26902946
Alignment:
| Q |
18 |
aatatagaacctggatggttttctttaatatgca |
51 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
26902913 |
aatatagaatctggatggttttctttaatatgca |
26902946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 17025 - 17321
Alignment:
| Q |
18 |
aatatagaacctggatggttttctttaatatgcacctatgcgccagaaaaatagttggaagatatataatattgattaaagacaaattatgaagtcctga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17025 |
aatatagaacctggatggttttctttaatatgcacatatgcgtcagaaaaataattggaagatatataatatcgattaaagacaaattatgaagtcctga |
17124 |
T |
|
| Q |
118 |
gttgtcattaattacttttgaagtatttgaagacatatatcagccctatacataaaagatcaagaatatagaaccttgtcgttaattttcttttgaatga |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17125 |
gttgtcactaattacttttgaagtatttgaagacatatatcagcccta--cataaaagatcaagaatatagaaccttgtcgttaattttcttttgaatga |
17222 |
T |
|
| Q |
218 |
tgccgcttcagtccttgctgctttgagcatttatccgggttcctttctcgtgacatgattgtatatgatatccgcctgttcacaaggatgactatgatg |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
17223 |
cgccgcttcggtccttgctgctttgagcatttatccgggttcctttctcgtgacatgattgtatattatatccgcctgttcataaggatgactatgatg |
17321 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 4281167 - 4281455
Alignment:
| Q |
18 |
aatatagaacctggatggttttctttaatatgcacctatgcgccagaaaaatagttggaagatatataatattgattaaagacaaattatgaagtcctga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4281167 |
aatatagaacctggatggttttctttaatatgcacatatgcgccagaaaaatagttggaagatat----------ttaaagacaaattatgaagtcctga |
4281256 |
T |
|
| Q |
118 |
gttgtcattaattacttttgaagtatttgaagacatatatcagccctatacataaaagatcaagaatatagaaccttgtcgttaattttcttttgaatga |
217 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281257 |
gttgttactaattacttttgaagtatttgaagacatatatcagccctatacataaaagatcaagaatatagaaccttgtcgttaattttcttttgaatga |
4281356 |
T |
|
| Q |
218 |
tgccgcttcagtccttgctgctttgagcatttatccgggttcctttctcgtgacatgattgtatatgatatccgcctgttcacaaggatgactatgatg |
316 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||| |
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|
| T |
4281357 |
tgccgcctcggtccttgctgctttgagcatttatccgagctcctttctcgtgatatgattgtatatgatatccacctgttaataaggatgactatgatg |
4281455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 12326203 - 12325910
Alignment:
| Q |
18 |
aatatagaacctggatggttttctttaatatgcacctatgcgccagaaaaatagttggaagatatataatattgattaaagacaaattatgaagtcctga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||| |
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|
| T |
12326203 |
aatatagaacctggatggttttctttaatatgcatatatgtaccagaaaaatagttggaagatatatgatatcgattaaagataaaatatgaagtcctga |
12326104 |
T |
|
| Q |
118 |
gttgtcattaattacttttgaagtatttgaagacatatatcagccctatacataaaagatcaagaatatagaaccttgtcgttaattttcttttgaatga |
217 |
Q |
| |
|
||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
12326103 |
gttgttactaattacttttgaaatgtttgaagacatatatcagccctatacataaaagatcaggaatatagaaccttgtcattaattttcttttgaatgg |
12326004 |
T |
|
| Q |
218 |
tgccgcttcagtccttgctgctttgagcatttatccgggttcctttctcgtgacatgattgtatatgatatccgcctgttcacaaggatgactatgatg |
316 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| ||||| |||||||||| |
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|
| T |
12326003 |
tgccgcttcggtcctcgctgctttgagcatttatccgggttcattcct-----catgattgtatatgatatctgcctgttcataaggaggactatgatg |
12325910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 31710557 - 31710433
Alignment:
| Q |
192 |
cttgtcgttaattttcttttgaatgatgccgcttcagtccttgctgctttgagcatttatccgggttcctttctcgtgacatgattgtatatgatatccg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
31710557 |
cttgtcgttaattttcttttgaatgatgccgcttcgatccttgctgctttgagcatttatccgggttcctttcttgtgacatgattgtatatgatatccg |
31710458 |
T |
|
| Q |
292 |
cctgttcacaaggatgactatgatg |
316 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
31710457 |
cctgttcataaggatgactatgatg |
31710433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 259
Target Start/End: Complemental strand, 20196726 - 20196581
Alignment:
| Q |
114 |
ctgagttgtcattaattacttttgaagtatttgaagacatatatcagccctatacataaaagatcaagaatatagaaccttgtcgttaattttcttttga |
213 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||||||||||| | |||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
20196726 |
ctgagttgtcactaattacatttgaaatgtttgaagacatatttaagccctatacgttaaagatcaagaatatagaaccttgtcattaattttcttttga |
20196627 |
T |
|
| Q |
214 |
atgatgccgcttcagtccttgctgctttgagcatttatccgggttc |
259 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
20196626 |
atgatgccgcttcggtcctcgctgctttgagcatttatccgtgttc |
20196581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 11203710 - 11203665
Alignment:
| Q |
271 |
catgattgtatatgatatccgcctgttcacaaggatgactatgatg |
316 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||||||| |
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|
| T |
11203710 |
catgattgtatatgatatccgcctgtttataaggaagactatgatg |
11203665 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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