View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7142_low_6 (Length: 326)
Name: NF7142_low_6
Description: NF7142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7142_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 39272923 - 39272635
Alignment:
| Q |
19 |
gcactttcaattccatatatataggaaatggaaaaacaaaacatcatatatcgcggttggtgtccttccaactcctacaattaccaagtccatgaagtaa |
118 |
Q |
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| T |
39272923 |
gcactttcaattccatatatataggaaatggaaaaacaaaacatcatatatcgcggttggtgtccttccaactcctacaattaccaagtccatgaagtaa |
39272824 |
T |
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| Q |
119 |
ctgagcctatgcttcggaaacgctatgatcgtccacgaaatcataagaagggtcatgtagcattcaaaactgtgctagaggaggctataacaccaccagc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39272823 |
ctgagcctatgcttcggaaacgctatgatcgtccacgaaatcataagaagggtcatgtagcattcaaaactgtgctagaggagcctataacaccaccagc |
39272724 |
T |
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| Q |
219 |
tgtggcagagactgatattgccactactgaacgtgtaaattcatttcagagtgttgatacaaaagctgatgcgtttattaagatggagc |
307 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39272723 |
tgtagcagagactgatattgccactactgaacgtgtaaattcatttcagagtgttgatacaaaagctgatgcgtttattaagatggagc |
39272635 |
T |
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