View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7143_high_1 (Length: 591)
Name: NF7143_high_1
Description: NF7143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7143_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 573
Target Start/End: Complemental strand, 45225199 - 45224653
Alignment:
| Q |
16 |
acatcagaattggacaaaatataaaataaatctatatgttgagttttatttttgtgagatttatgtttttatcatgaaaggctaaagtattgtaagagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
45225199 |
acatcagaattggacaaaatataaaatatatctatatgttgagttttatttttgtgagatttatgttttaatcatgaaaggctaaagtatt--aagagtt |
45225102 |
T |
|
| Q |
116 |
aagacaaacaacaggataaggcacaacgttgacatgattatgtttcatttcgatcgtgatatcatatgagttttaaaaaagaagggtacatgaacatgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45225101 |
aagacaaacaacaggataaggcacaacgttgacatgattatgtttcatttcgatcgtgatat-----gagttttaaaaaagaagggtacatgaacatgaa |
45225007 |
T |
|
| Q |
216 |
catgaccatgcaccactgtgaatgtgatgatgaaagcaatggagagggaccactgacctgagcaagtcatacaatacaacagtaccatgccaattgggag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45225006 |
catgaccatgcaccactgtgaatgtgatgatgaaagcaatggagagggaccactgacctgagcaagtcatacaatacaacagtaacatgccaattgggag |
45224907 |
T |
|
| Q |
316 |
tctcatttagtttcagtcacaaaaccctaattaaccaatgaatcaggtaaagaacatgttggtttgaagagtggagacacgttctcattaaagaatgaat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
45224906 |
tctcatttagtttcagtcacaaaaccctaa----ccaatgaatcaggtaaagaacatgttggtttgaagagtggagacatgttctgattaaagaatgaat |
45224811 |
T |
|
| Q |
416 |
ataatgctgatttgaatatattatttctttcatgcttctgcaacgtaactatatatatagttgagcaaagagtaataaaatcagcaattggctttgtgga |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45224810 |
ataatgctgatttgaatatattatttctttcatgcttctgcaacgtaactatatatatagttgagcaaagagtaataaaatcagcaattggctttgtgga |
45224711 |
T |
|
| Q |
516 |
tattttttcttctaccctgttcaaaataattgatatagatccccttgggcgaacatcg |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45224710 |
tattttttcttctaccctgttcaaaataattgatatagatccccttgggcgaacatcg |
45224653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University