View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7143_high_6 (Length: 252)
Name: NF7143_high_6
Description: NF7143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7143_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29638893 - 29638654
Alignment:
| Q |
1 |
cgtctgataagatcatcagtaacaaaatactcaacattaatttcttccacatgatcaccaccttgatcaacagcatacatacaaatcttctccaagttat |
100 |
Q |
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| T |
29638893 |
cgtctgataagatcatcagtaacaaaatactcaacattaatttcttccacatgatcaccaccttgatcaacagcatacatacaaatcttctccaagttat |
29638794 |
T |
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| Q |
101 |
gtggtgaatggagaccattgatcatttcaatgctcctccacatgagaggttccctacaaatttccctccacataggacacacttgacgtgcattcatcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29638793 |
gtggtgaatggagaccattgatcatttcaatgctcttccacatgagaggatccctacaaatttccctccacataggacacactagacgtgcattcatcac |
29638694 |
T |
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| Q |
201 |
taggtcaacagcaccaagcaatttcagtatatttgatgtc |
240 |
Q |
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| T |
29638693 |
taggtcaacagcaccaagcaatttgagtatatttgatgtc |
29638654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29646838 - 29646599
Alignment:
| Q |
1 |
cgtctgataagatcatcagtaacaaaatactcaacattaatttcttccacatgatcaccaccttgatcaacagcatacatacaaatcttctccaagttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29646838 |
cgtctgataagatcatcagtaacaaaatactcaacattaatttcttccacatgatcaccaccttgatcaacagcatacatacaaatcttctccaagttat |
29646739 |
T |
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| Q |
101 |
gtggtgaatggagaccattgatcatttcaatgctcctccacatgagaggttccctacaaatttccctccacataggacacacttgacgtgcattcatcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29646738 |
gtggtgaatggagaccattgatcatttcaatgctcttccacatgagaggatccctacaaatttccctccacataggacacactagacgtgcattcatcac |
29646639 |
T |
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| Q |
201 |
taggtcaacagcaccaagcaatttcagtatatttgatgtc |
240 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
29646638 |
taggtcaacagcaccaagcaatttgagtatatttgatgtc |
29646599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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