View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7143_low_11 (Length: 208)
Name: NF7143_low_11
Description: NF7143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7143_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 41813096 - 41812920
Alignment:
| Q |
16 |
catcaaaacaatagcaaacccacgaatactcctgcatcacagctagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcacc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813096 |
catcaaaacaatagcaaacccacgaatactcctgcatcacagccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcacc |
41812997 |
T |
|
| Q |
116 |
accaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaac |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41812996 |
accaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagtagcacctaaacccaaacatgccaaccaac |
41812920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 7605307 - 7605483
Alignment:
| Q |
16 |
catcaaaacaatagcaaacccacgaatactcctgcatcacagctagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcacc |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7605307 |
catcaaaacaatagcaaacccacgaatactcctgcatcacagccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcacc |
7605406 |
T |
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| Q |
116 |
accaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7605407 |
accaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgtcaaccaac |
7605483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 31768869 - 31769046
Alignment:
| Q |
16 |
catcaaaacaat-agcaaacccacgaatactcctgcatcacagctagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcac |
114 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31768869 |
catcaaaacaattagcaaacccacgaatactcctgcatcacagccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatcttac |
31768968 |
T |
|
| Q |
115 |
caccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768969 |
caccaaaaggaaagcaaaaggaagccaccacagccgctgaaactgcagcagcacctaaacccaaacatgccaaccaac |
31769046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 14186963 - 14186872
Alignment:
| Q |
59 |
tagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccg |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14186963 |
tagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccg |
14186872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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