View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7143_low_4 (Length: 425)
Name: NF7143_low_4
Description: NF7143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7143_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 51863799 - 51863524
Alignment:
| Q |
1 |
gcagataaccaaccttacctaacatctgacgacgaagggtttgttaacttgtccaatcggacaattccacgagtttaggcatcaatttcgaattgcctca |
100 |
Q |
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| T |
51863799 |
gcagataaccaaccttacctaacatctgacgacgaagggtttgttaacttgtccaatcggacaattccacgagtttaggcatcaatttcgaattgcctca |
51863700 |
T |
|
| Q |
101 |
gttataaactggaactatagtaaactcgggaaatgaactcaagtttactcaactagacaccgaaacaattgcaaattatttcagatcataatattcgtaa |
200 |
Q |
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| T |
51863699 |
gttataaactggaactatagtaaactccggaaatgaactcaagtttactcaactagacaccgaaacaattgcaaattatttcagatcataatattcataa |
51863600 |
T |
|
| Q |
201 |
ggaggagaaaaatttaccagtgagatcaccaagcaatgctctacaaggaccttgagtaacattattagcaacatcc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51863599 |
ggaggagaaaaatttaccagtgagatcaccaagcaatgctctacaaggaccttgagtaacattattagcaacatcc |
51863524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 51863497 - 51863375
Alignment:
| Q |
303 |
cgcgacagcagaatggcgatgattcttggtatcaccaaatttccatcccaaatccgcagcatgaccaataataagaacagaaatcacaatcgaaacagat |
402 |
Q |
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| T |
51863497 |
cgcgacagcagaatggcgatgattcttggtatcaccaaatttccatcccaaatccgcagcatgaccaataataagaacagaaatcacaatcgaaacagct |
51863398 |
T |
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| Q |
403 |
cctccgagtataaacggtcttct |
425 |
Q |
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| T |
51863397 |
cctccgagtataaacggtcttct |
51863375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 28520381 - 28520418
Alignment:
| Q |
238 |
gctctacaaggaccttgagtaacattattagcaacatc |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28520381 |
gctctacaaggaccttgagtaacattattagcaacatc |
28520418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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