View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7143_low_5 (Length: 374)

Name: NF7143_low_5
Description: NF7143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7143_low_5
NF7143_low_5
[»] chr5 (9 HSPs)
chr5 (1-156)||(26063041-26063196)
chr5 (110-157)||(35635864-35635911)
chr5 (110-157)||(38396804-38396851)
chr5 (110-157)||(21745033-21745080)
chr5 (109-156)||(22273678-22273725)
chr5 (110-157)||(42740888-42740935)
chr5 (110-156)||(32863333-32863379)
chr5 (110-159)||(3173847-3173895)
chr5 (110-142)||(18740036-18740068)
[»] chr8 (7 HSPs)
chr8 (1-86)||(14383500-14383585)
chr8 (110-157)||(32381197-32381243)
chr8 (110-157)||(32435152-32435198)
chr8 (108-157)||(33360100-33360149)
chr8 (109-157)||(1667822-1667870)
chr8 (109-157)||(16658527-16658575)
chr8 (107-138)||(14383450-14383481)
[»] chr4 (7 HSPs)
chr4 (1-86)||(20038044-20038129)
chr4 (1-155)||(21421920-21422073)
chr4 (108-156)||(14800356-14800404)
chr4 (110-156)||(8433371-8433416)
chr4 (108-142)||(33754312-33754346)
chr4 (110-158)||(44504331-44504379)
chr4 (110-141)||(47825605-47825636)
[»] chr1 (4 HSPs)
chr1 (1-156)||(18994516-18994673)
chr1 (110-142)||(26014229-26014261)
chr1 (112-142)||(324379-324409)
chr1 (110-139)||(26354712-26354741)
[»] chr2 (2 HSPs)
chr2 (197-272)||(11113095-11113170)
chr2 (113-156)||(17738770-17738813)
[»] chr6 (3 HSPs)
chr6 (108-157)||(7170715-7170764)
chr6 (110-141)||(16497560-16497591)
chr6 (110-142)||(14125098-14125130)
[»] chr7 (5 HSPs)
chr7 (108-156)||(31418966-31419014)
chr7 (110-156)||(21453181-21453227)
chr7 (108-141)||(25533976-25534009)
chr7 (110-156)||(12003331-12003377)
chr7 (112-141)||(44660068-44660097)
[»] chr3 (5 HSPs)
chr3 (109-156)||(2733331-2733378)
chr3 (109-152)||(40922552-40922595)
chr3 (109-157)||(2339178-2339226)
chr3 (113-155)||(9456119-9456161)
chr3 (110-156)||(52893141-52893187)
[»] scaffold0005 (1 HSPs)
scaffold0005 (108-156)||(39323-39371)
[»] scaffold1160 (1 HSPs)
scaffold1160 (110-153)||(2168-2211)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 26063196 - 26063041
Alignment:
Q  1 gaatcgcggttcagaaagggaaaaatgaaagtgataattgtaattttcattgtaactcaaggacaatatagtaatttccagcctatnnnnnnnnnnnnnn 100  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||                  
T  26063196 gaatcgcggttcagaaaggaaaaaatgaaagtggtaattgtaattttcattgtaactcaaggacaatatagtaatttctagcctataaaaaaattttaaa 26063097  T
Q  101 nnnnntttaatggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
          |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26063096 aaaaaattaatggggtggcggtggctcccccttgccaccccccggctccgccactg 26063041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 35635864 - 35635911
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35635864 atggggtggcggtggctccccattgccaccccctggctccgccactgc 35635911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 38396804 - 38396851
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  38396804 atggggtggcggtggctcctccttaccaccccctggctccgccactgc 38396851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 21745033 - 21745080
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||    
T  21745033 atggggtggcggtggctcccccttgccaccccccagttccgccactgc 21745080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 22273678 - 22273725
Alignment:
Q  109 aatggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  22273678 aatggggtggctgtggctcccccttgctaccccctggatccgccactg 22273725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 42740888 - 42740935
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||    
T  42740888 atggggtggcggtggctcccccttgccaccccccagttccgccactgc 42740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 32863379 - 32863333
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||    
T  32863379 atggggtggcggtggctcccccttgccaccccccagttccgccactg 32863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 3173895 - 3173847
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgcag 159  Q
    |||||||||||||||||||||||||||||||||  | |||||||||||||    
T  3173895 atggggtggcggtggctcccccttgccaccccc-agttccgccactgcag 3173847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 18740036 - 18740068
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccc 142  Q
    |||||||||||||||||||||||||||| ||||    
T  18740036 atggggtggcggtggctcccccttgccaacccc 18740068  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14383585 - 14383500
Alignment:
Q  1 gaatcgcggttcagaaagggaaaaatgaaagtgataattgtaattttcattgtaactcaaggacaatatagtaatttccagcctat 86  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14383585 gaatcgcggttcagaaagggaaaaatgaaagtggtaattgtaactttcattgtaactcaaggacaatatagtaatttccagcctat 14383500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 32381243 - 32381197
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32381243 atggggtggcggtggctcccccttgccaccccc-ggctccgccactgc 32381197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 32435198 - 32435152
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32435198 atggggtggcggtggctcccccttgccaccccc-ggctccgccactgc 32435152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 33360149 - 33360100
Alignment:
Q  108 taatggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||    
T  33360149 taatggggtggcggtggctcccccttgccaccccctaattccgccactgc 33360100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 1667870 - 1667822
Alignment:
Q  109 aatggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||    
T  1667870 aatggggtggcggtggctcccccttgccaccccccagttccgccactgc 1667822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 16658575 - 16658527
Alignment:
Q  109 aatggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||| ||||||||||||||||||  | |||||||||||    
T  16658575 aatggggtggcggtgtctcccccttgccaccccccagttccgccactgc 16658527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 14383481 - 14383450
Alignment:
Q  107 ttaatggggtggcggtggctcccccttgccac 138  Q
    ||||||||||||||||||||||||||||||||    
T  14383481 ttaatggggtggcggtggctcccccttgccac 14383450  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 20038129 - 20038044
Alignment:
Q  1 gaatcgcggttcagaaagggaaaaatgaaagtgataattgtaattttcattgtaactcaaggacaatatagtaatttccagcctat 86  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20038129 gaatcacggttcagaaagggaaaaatgaaagtggtaattgtaattttcattgtaactcaaggacaatatagtaatttccagcctat 20038044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 21422073 - 21421920
Alignment:
Q  1 gaatcgcggttcagaaagggaaaaatgaaagtgataattgtaattttcattgtaactcaaggacaatatagtaatttccagcctatnnnnnnnnnnnnnn 100  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||                  
T  21422073 gaatcgcggttcagaaaggaaaaaatgaaa-tggtaattgtaattttcattgtaactcaaggacaatatagtaattttcagcctataaaaaaattataaa 21421975  T
Q  101 nnnnntttaatggggtggcggtggctcccccttgccaccccctggctccgccact 155  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21421974 aaaaaaataatggggtggcggtggctcccccttgccaccccctggctccgccact 21421920  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 14800356 - 14800404
Alignment:
Q  108 taatggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    |||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  14800356 taatggggtggctgtggctcccccttgccaccccctagttccgccactg 14800404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 8433371 - 8433416
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||    
T  8433371 atggggtggcggtggctcccccttgccaccccc-ggttccgccactg 8433416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 33754312 - 33754346
Alignment:
Q  108 taatggggtggcggtggctcccccttgccaccccc 142  Q
    |||||||||||||||||||||||||||||||||||    
T  33754312 taatggggtggcggtggctcccccttgccaccccc 33754346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 44504379 - 44504331
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactgca 158  Q
    |||||||||||||||||||||||||||| ||||| | |||||| |||||    
T  44504379 atggggtggcggtggctcccccttgccaacccctagttccgcccctgca 44504331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 47825636 - 47825605
Alignment:
Q  110 atggggtggcggtggctcccccttgccacccc 141  Q
    ||||||||||||||||||||||||||||||||    
T  47825636 atggggtggcggtggctcccccttgccacccc 47825605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 18994516 - 18994673
Alignment:
Q  1 gaatcgcggttcagaaagggaaaaatgaaagtgataattgtaattttcattgtaactcaaggacaatatagtaatttccagcctatnnnnnnnnnnnnnn 100  Q
    |||| |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||                  
T  18994516 gaattgcggttcagaaaggaaaaaatgaaagtggtaattataattttcattgtaactcaaggacaatgtagtaatttccagcatataaaaaaataaaaaa 18994615  T
Q  101 nnnnnt--ttaatggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18994616 aaataaaattaatggggtggcggtggctcccccttgccaccccctggctccgccactg 18994673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 26014261 - 26014229
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccc 142  Q
    |||||||||||||||||||||||||||||||||    
T  26014261 atggggtggcggtggctcccccttgccaccccc 26014229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 142
Target Start/End: Complemental strand, 324409 - 324379
Alignment:
Q  112 ggggtggcggtggctcccccttgccaccccc 142  Q
    |||||||||||||||||||||||||||||||    
T  324409 ggggtggcggtggctcccccttgccaccccc 324379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 26354741 - 26354712
Alignment:
Q  110 atggggtggcggtggctcccccttgccacc 139  Q
    ||||||||||||||||||||||||||||||    
T  26354741 atggggtggcggtggctcccccttgccacc 26354712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 11113095 - 11113170
Alignment:
Q  197 acacagtcaatccaaaaattggtgcggtgcggtagtggagtgcgtaacagccgctatattttggcgtcacaactgc 272  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||    
T  11113095 acacagtcaatccaaaaattggtgtggtgcggtagtggagtgcctaacagccgctatattttggtggcacaactgc 11113170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 17738770 - 17738813
Alignment:
Q  113 gggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  17738770 gggtggcgatggctcccccttgccatcccctggctccgccactg 17738813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 7170764 - 7170715
Alignment:
Q  108 taatggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  7170764 taatggggtggcggtggctcccccttgccaccccctggttccgcaactgc 7170715  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 141
Target Start/End: Original strand, 16497560 - 16497591
Alignment:
Q  110 atggggtggcggtggctcccccttgccacccc 141  Q
    ||||||||||||||||||||||||||||||||    
T  16497560 atggggtggcggtggctcccccttgccacccc 16497591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 14125098 - 14125130
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccc 142  Q
    ||||||| |||||||||||||||||||||||||    
T  14125098 atggggtagcggtggctcccccttgccaccccc 14125130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 31419014 - 31418966
Alignment:
Q  108 taatggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  31419014 taatggggtggcggtggctcccccttgccaccccccggttccgccactg 31418966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 21453181 - 21453227
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||    
T  21453181 atggggtggcggtggctcccccttgccaccccccagttccgccactg 21453227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 25534009 - 25533976
Alignment:
Q  108 taatggggtggcggtggctcccccttgccacccc 141  Q
    ||||||||||||||||||||||||||||||||||    
T  25534009 taatggggtggcggtggctcccccttgccacccc 25533976  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 12003331 - 12003377
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    ||||||||||||||||||| |||||||||||||  | ||||||||||    
T  12003331 atggggtggcggtggctcctccttgccaccccccagttccgccactg 12003377  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 44660097 - 44660068
Alignment:
Q  112 ggggtggcggtggctcccccttgccacccc 141  Q
    ||||||||||||||||||||||||||||||    
T  44660097 ggggtggcggtggctcccccttgccacccc 44660068  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 2733378 - 2733331
Alignment:
Q  109 aatggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  2733378 aatggggtggctgtggctcccccttgccaccccctggatccgccactg 2733331  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 40922595 - 40922552
Alignment:
Q  109 aatggggtggcggtggctcccccttgccaccccctggctccgcc 152  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  40922595 aatggggtggcggtggctcccccttgccaccccctggttccgcc 40922552  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 2339178 - 2339226
Alignment:
Q  109 aatggggtggcggtggctcccccttgccaccccctggctccgccactgc 157  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||    
T  2339178 aatggggtggcggtggctcccccttgccaccccccagttccgccactgc 2339226  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 9456161 - 9456119
Alignment:
Q  113 gggtggcggtggctcccccttgccaccccctggctccgccact 155  Q
    ||||||||||||||||||||||||||||||  | |||||||||    
T  9456161 gggtggcggtggctcccccttgccaccccccagttccgccact 9456119  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 52893187 - 52893141
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    |||||||||||||||||||||||||||| ||||  | ||||||||||    
T  52893187 atggggtggcggtggctcccccttgccaacccccagttccgccactg 52893141  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 39371 - 39323
Alignment:
Q  108 taatggggtggcggtggctcccccttgccaccccctggctccgccactg 156  Q
    |||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  39371 taatggggtggctgtggctcccccttgccaccccctagttccgccactg 39323  T

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Target: scaffold1160 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 2211 - 2168
Alignment:
Q  110 atggggtggcggtggctcccccttgccaccccctggctccgcca 153  Q
    |||||||||||||||||||||||| ||||||||| | |||||||    
T  2211 atggggtggcggtggctcccccttaccaccccctagttccgcca 2168  T

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