View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7143_low_6 (Length: 362)
Name: NF7143_low_6
Description: NF7143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7143_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 29646865 - 29647211
Alignment:
| Q |
1 |
ttccttttgttttcattcaattaatttggttaggatttgttcttatttctgattagtacaaaatgtaggttagaataaattgacagaaaaaggagtataa |
100 |
Q |
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| T |
29646865 |
ttccttttgttttcattcaattaatttggttaggattttttcttatttctgattagtacaaaatgtaggttagaataaattgatacaaaaaggagtataa |
29646964 |
T |
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| Q |
101 |
aatgatatatcttttttgcatcatgtataaaacgatacatttgatagtccttttccaatttttaattatttgtgtaatatctatgtcaaatttaatttaa |
200 |
Q |
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| T |
29646965 |
aatgatatatcttttttgcatcatgtataaaacgatacatttgatagtcattttccaatttataattatttgtgtaatatctatgacacatttaatttaa |
29647064 |
T |
|
| Q |
201 |
ttttcattgcataaatgttgtttgttcaaaaataatataatatacaaatatttttctttaacggcaaactaaattattttagataagaataggaaaaaat |
300 |
Q |
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| T |
29647065 |
ttttcattgcataaatgttgtttgtgcaaaaataatataatatacaaatatttttctttaatggcaaactaaattattttagataagaatagg-aaaaat |
29647163 |
T |
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| Q |
301 |
ataaatagta--tgacctacaaaattgaaagatgtacgatcaaaacac |
346 |
Q |
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| T |
29647164 |
ataaatagtaattgacctacaaaattgaaagatgtacgatcaaaacac |
29647211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 29638986 - 29639132
Alignment:
| Q |
58 |
acaaaatgtaggttagaataaattgacagaaaaaggag---tataaaatgatatatcttttttgcatc-atgtataaaacgatacatttgata-gtcctt |
152 |
Q |
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|||||||| ||||||||||||||||| | |||||| || ||||||||||| |||||| |||| | |||||||||||||||||||| | ||| || |
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| T |
29638986 |
acaaaatgcaggttagaataaattgatacaaaaagaaggcgtataaaatgat-----tttttttcatccaagtataaaacgatacatttgaaaagtcttt |
29639080 |
T |
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| Q |
153 |
ttccaatttttaattatttgtgtaatatctatgtcaaatttaatttaatttt |
204 |
Q |
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| T |
29639081 |
ttccaatttttaattatttgtgtaatatttatatcaaattttatttaatttt |
29639132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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