View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7143_low_9 (Length: 229)
Name: NF7143_low_9
Description: NF7143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7143_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26064172 - 26064394
Alignment:
| Q |
1 |
tccaggtttcatactttgtttacaaatgtgtcttatttcatgtattttccaatgcctttcacccaaagttcctaattccctaacattgcacataagcttg |
100 |
Q |
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| T |
26064172 |
tccaggtttcatactttgtttacaaatgtgtcttatttcatgtattttccaatgcctttcacccaaagttcctaattccctaacattgcacataagcttg |
26064271 |
T |
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| Q |
101 |
cacaatgtgtttatgaagatgagataaaacaccnnnnnnnttaaattagcatacgacaaatgttacagtaccaaaataagggtatatgtataagtcattg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26064272 |
cacaatgtgtttatgaagatgagataaaacaccaaaaaaattaaattagcatacgacaaatgttacagtaccaaaataagggtatatgcataagtcattg |
26064371 |
T |
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| Q |
201 |
tgctcctaagacacagaaacaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
26064372 |
tgctcctaagacacagaaacaag |
26064394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 26035362 - 26035450
Alignment:
| Q |
11 |
atactttgtttacaaatgtgtcttatttcatgtattttccaatgcctttcacccaaagttcctaattccctaacattgcacataagcttgc |
101 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
26035362 |
atactttgtttacaaatgtgtctgattttatgtattttccaatggcttt-gcccaaagttcc-atacccctaacattgcacataagcttgc |
26035450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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