View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7144_high_14 (Length: 356)

Name: NF7144_high_14
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7144_high_14
NF7144_high_14
[»] chr5 (13 HSPs)
chr5 (29-352)||(13452968-13453291)
chr5 (143-352)||(13425559-13425768)
chr5 (144-335)||(13412308-13412499)
chr5 (143-352)||(13418685-13418894)
chr5 (143-350)||(13446265-13446472)
chr5 (176-333)||(13411596-13411753)
chr5 (157-338)||(13372489-13372670)
chr5 (152-336)||(13389870-13390054)
chr5 (176-324)||(13386094-13386242)
chr5 (169-336)||(13394330-13394497)
chr5 (125-204)||(13448815-13448899)
chr5 (265-321)||(13448908-13448964)
chr5 (175-338)||(13378245-13378408)
[»] chr4 (1 HSPs)
chr4 (154-336)||(47600455-47600637)
[»] chr8 (1 HSPs)
chr8 (173-253)||(28431615-28431695)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 29 - 352
Target Start/End: Original strand, 13452968 - 13453291
Alignment:
Q  29 atataacaaagatgcaagtatgaaatctccttggaaagtgatacactgaatgctataaactactgcattttatttttatcacttgaccattgaattattc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13452968 atataacaaagatgcaagtatgaaatctccttggaaagtgatacactgaatgctataaactactgcattttatttttatcacttgaccattgaattattc 13453067  T
Q  129 tctgaaatatttgaatatcctgcaaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13453068 tctgaaatatttgaatatcctgcaaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacatctgctttaagaaggcg 13453167  T
Q  229 ctccatcgctgtgttgacataatcaataggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatc 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13453168 ctccatcgctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatc 13453267  T
Q  329 cctccaatcaaacttcctgctact 352  Q
    ||||||||||||||||||||||||    
T  13453268 cctccaatcaaacttcctgctact 13453291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 143 - 352
Target Start/End: Original strand, 13425559 - 13425768
Alignment:
Q  143 atatcctgcaaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgt 242  Q
    |||||||||||  || ||| ||||| ||||| ||| |||||||||||||| || |||||||||||||| ||||||||    || |||||||| |||||||    
T  13425559 atatcctgcaatgtttaagggcttggttttagtgtatttccaatatcaataacgaatcgatatttcacatctgctttctcgagacgctccattgctgtgt 13425658  T
Q  243 tgacataatcaataggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatcaaact 342  Q
    ||||||||||||||||||  | ||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13425659 tgacataatcaataggaacaacctcaatatcaggtgttacattgtgttcggccgcaaaatcaatcatttcttgagtctcctttatccctccaatcaaact 13425758  T
Q  343 tcctgctact 352  Q
    ||| ||||||    
T  13425759 tccagctact 13425768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 144 - 335
Target Start/End: Original strand, 13412308 - 13412499
Alignment:
Q  144 tatcctgcaaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgtt 243  Q
    ||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| | |||  ||| |||| ||| ||||||||    
T  13412308 tatcctgcaaagttcaagagcttggtttcagtgtgtttccaatatcaatcacaaatcgatatttcacgtctcccttagcaagacgctgcattgctgtgtt 13412407  T
Q  244 gacataatcaataggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaa 335  Q
    |||||||||||| ||||  | ||| ||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||    
T  13412408 gacataatcaatcggaacaacctcgatatccggctttacattgtgttctgccgcaaaattaatcatttcttgagtctcctttaaccctccaa 13412499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 143 - 352
Target Start/End: Original strand, 13418685 - 13418894
Alignment:
Q  143 atatcctgcaaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgt 242  Q
    |||||||||||  || ||| ||||| ||| |  || ||||||||||||||||| ||||||||||| || |||||||||   || |||||||| |||||||    
T  13418685 atatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttatcgagacgctccattgctgtgt 13418784  T
Q  243 tgacataatcaataggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatcaaact 342  Q
    ||||||||||||||||||  | |||||||||||||  |||||||||||| || |||||||||| |||||||||| ||||||| |||||||||||||||||    
T  13418785 tgacataatcaataggaacaacctcaatatcaggcgttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaatcaaact 13418884  T
Q  343 tcctgctact 352  Q
    ||| ||||||    
T  13418885 tccagctact 13418894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 350
Target Start/End: Original strand, 13446265 - 13446472
Alignment:
Q  143 atatcctgcaaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgt 242  Q
    |||||||||||  || ||| ||||| ||||| ||  ||||||||||||||||| ||||||||||| || ||| |||||| ||| |||||||| || ||||    
T  13446265 atatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggtgt 13446364  T
Q  243 tgacataatcaataggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatcaaact 342  Q
    ||||||||||||||||||  | |||||| ||||||  |||||||||||  || |||||||||||||||||||||||||| || ||||||||||| |||||    
T  13446365 tgacataatcaataggaacaacctcaatctcaggcgttacattgtgtttagcagcaaaatcaatcatttcttgagtctcttttatccctccaattaaact 13446464  T
Q  343 tcctgcta 350  Q
    ||| ||||    
T  13446465 tccagcta 13446472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 333
Target Start/End: Complemental strand, 13411753 - 13411596
Alignment:
Q  176 gtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataatcaataggaatgatctcaatatcag 275  Q
    ||||||| ||| |||||||||||||||||||| || |||| |||  | |  |||||||| ||||||||||||||||| ||||| ||||  ||||||||||    
T  13411753 gtgtttctaatgtcaatcacaaatcgatatttaacatctgatttgtggacacgctccattgctgtgttgacataatccataggtatgacttcaatatcag 13411654  T
Q  276 gctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctcc 333  Q
    | | |||||||||||  || |||||||||||||| |||||||| ||||| || |||||    
T  13411653 gttgtacattgtgtttagcagcaaaatcaatcatctcttgagtttccttcattcctcc 13411596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 338
Target Start/End: Original strand, 13372489 - 13372670
Alignment:
Q  157 tcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataatcaata 256  Q
    ||||||||||| ||| || ||||||||||| ||||| ||||| ||||||||||| || ||||| || || || ||||| ||  | || |||||||| ||     
T  13372489 tcaagagcttgctttcaacgtgtttccaatgtcaataacaaagcgatatttcacatcagctttgagtagacgatccattgcactattcacataatctatt 13372588  T
Q  257 ggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatca 338  Q
    ||||| | |||||||||||| |  ||||  ||||  || |||||||||||||||||||| |||||||| |||||||||||||    
T  13372589 ggaataacctcaatatcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatca 13372670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 336
Target Start/End: Complemental strand, 13390054 - 13389870
Alignment:
Q  152 aaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataat 251  Q
    |||||| |||| |||| ||| || |||||||| ||||| | ||||||||||||||| || |||||||| || || ||||| || |||||||| |||||||    
T  13390054 aaaatttaagaacttggtttcaaagtgtttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataat 13389955  T
Q  252 caataggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaat 336  Q
    | | ||||| ||  ||||| ||||| | |||  ||||||  || ||||| |||| ||| ||||||||||||||||| ||||||||    
T  13389954 ccacaggaacgacttcaatgtcaggttttacgctgtgtttagcagcaaagtcaagcatctcttgagtctccttgatgcctccaat 13389870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 324
Target Start/End: Complemental strand, 13386242 - 13386094
Alignment:
Q  176 gtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataatcaataggaatgatctcaatatcag 275  Q
    ||||||||||| || | ||||||||||||||| || |||||||| || || ||||| || |||||||| |||||||| | |||||  |  ||||| ||||    
T  13386242 gtgtttccaatgtcgagcacaaatcgatatttgacatctgctttgaggagtcgctcaattgctgtgttaacataatccacaggaacaacttcaatgtcag 13386143  T
Q  276 gctatacattgtgttccgccgcaaaatcaatcatttcttgagtctcctt 324  Q
    | | |||||||||||  || ||||| |||| ||| ||||||||||||||    
T  13386142 gttttacattgtgtttagcagcaaattcaagcatctcttgagtctcctt 13386094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 336
Target Start/End: Complemental strand, 13394497 - 13394330
Alignment:
Q  169 ttttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataatcaataggaatgatctca 268  Q
    |||||| |||||||| ||||| | ||||||||||||||| || |||||||| || || |||| ||| |||||||| |||||||| |  || ||||  ||     
T  13394497 ttttaaagtgtttccgatatcgagcacaaatcgatatttgacatctgctttgaggagtcgcttcattgctgtgttaacataatccactggtatgacttcg 13394398  T
Q  269 atatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaat 336  Q
    || || || | || ||||||||  || |||||||||||||||||||| ||||| || || ||||||||    
T  13394397 atgtctggttttatattgtgtttagcagcaaaatcaatcatttcttgtgtctctttcatgcctccaat 13394330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 13448815 - 13448899
Alignment:
Q  125 attctctgaaatatttgaatatcctgcaaaattcaagagcttgattttaatgtgtttccaa-----tatcaatcacaaatcgata 204  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||| | ||| |||||||     |||||||||||||||||||    
T  13448815 attctctgaaatatttgaacatcctgcaaaattcaagaacttggtttcagtgtatttccaatacagtatcaatcacaaatcgata 13448899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 13448908 - 13448964
Alignment:
Q  265 ctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctc 321  Q
    |||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  13448908 ctcagtatcaggctttacattgtgttctgctgcaaaatcaatcatttcttgagtctc 13448964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 338
Target Start/End: Original strand, 13378245 - 13378408
Alignment:
Q  175 tgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataatcaataggaatgatctcaatatca 274  Q
    |||||||||||| ||||| ||||||||||||||||| || ||||| |  | ||| ||||| || || || |||||||| |  ||||  | ||||||||||    
T  13378245 tgtgtttccaatgtcaataacaaatcgatatttcacatcagctttgactaagcgttccattgcagtatttacataatccactggaacaacctcaatatca 13378344  T
Q  275 ggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatca 338  Q
    || | |||    ||||  || |||||||||||||||||||| || ||||| |||||||||||||    
T  13378345 ggttttacgccatgtttggctgcaaaatcaatcatttcttgtgtttccttcatccctccaatca 13378408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 154 - 336
Target Start/End: Original strand, 47600455 - 47600637
Alignment:
Q  154 aattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataatca 253  Q
    |||| ||||||||| ||| |  ||||||||||| |||||||||||||||||||| || |||||||| || || |||||||| || ||||| ||||||||     
T  47600455 aatttaagagcttggtttgagagtgtttccaatgtcaatcacaaatcgatatttgacatctgctttgaggagtcgctccattgcagtgttaacataatcc 47600554  T
Q  254 ataggaatgatctcaatatcaggctatacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaat 336  Q
    ||||| ||||  |||||   ||| | |||||||||||  || |||||||||| ||| |||||||||||||| |||||||||||    
T  47600555 atagggatgacttcaatggtaggttttacattgtgtttagcagcaaaatcaagcatatcttgagtctccttcatccctccaat 47600637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 28431695 - 28431615
Alignment:
Q  173 aatgtgtttccaatatcaatcacaaatcgatatttcacgtctgctttaagaaggcgctccatcgctgtgttgacataatca 253  Q
    ||||| || ||||||||||| |||||||||||||| || ||||||||||| || |||||||  || ||||| |||||||||    
T  28431695 aatgtattcccaatatcaataacaaatcgatatttgacatctgctttaagcagacgctccaatgcagtgttcacataatca 28431615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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