View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7144_high_16 (Length: 343)

Name: NF7144_high_16
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7144_high_16
NF7144_high_16
[»] chr7 (11 HSPs)
chr7 (113-270)||(42628029-42628186)
chr7 (26-122)||(42629190-42629286)
chr7 (22-144)||(36653695-36653817)
chr7 (26-141)||(35595231-35595346)
chr7 (27-90)||(31882911-31882974)
chr7 (260-297)||(42627715-42627752)
chr7 (65-115)||(16488174-16488224)
chr7 (77-141)||(13608555-13608621)
chr7 (65-94)||(30665200-30665229)
chr7 (99-168)||(42627534-42627602)
chr7 (65-109)||(30859857-30859901)
[»] chr3 (11 HSPs)
chr3 (172-296)||(46855586-46855710)
chr3 (23-144)||(39708230-39708351)
chr3 (25-149)||(53038857-53038975)
chr3 (42-110)||(53831360-53831428)
chr3 (26-93)||(45003345-45003414)
chr3 (61-110)||(30478483-30478532)
chr3 (96-140)||(30259712-30259756)
chr3 (65-99)||(4041045-4041079)
chr3 (97-127)||(7255002-7255032)
chr3 (65-110)||(16280946-16280991)
chr3 (97-142)||(41071538-41071583)
[»] chr6 (9 HSPs)
chr6 (24-150)||(1860345-1860471)
chr6 (22-125)||(30746487-30746590)
chr6 (22-110)||(31778794-31778882)
chr6 (97-143)||(864483-864529)
chr6 (65-110)||(32879700-32879745)
chr6 (97-143)||(5449590-5449635)
chr6 (97-143)||(34396935-34396981)
chr6 (35-80)||(31779505-31779550)
chr6 (74-110)||(807131-807167)
[»] chr4 (17 HSPs)
chr4 (22-141)||(34981468-34981587)
chr4 (22-108)||(26251445-26251531)
chr4 (26-109)||(34981916-34981999)
chr4 (82-144)||(9957619-9957681)
chr4 (19-109)||(55863632-55863722)
chr4 (27-108)||(55862228-55862309)
chr4 (22-73)||(40361261-40361312)
chr4 (65-110)||(11660963-11661008)
chr4 (60-106)||(4675037-4675083)
chr4 (24-108)||(19487485-19487570)
chr4 (65-110)||(32304777-32304822)
chr4 (76-114)||(45548504-45548542)
chr4 (65-110)||(32303916-32303961)
chr4 (65-110)||(40361678-40361723)
chr4 (65-110)||(53260214-53260259)
chr4 (92-136)||(53214398-53214442)
chr4 (96-140)||(53801394-53801437)
[»] chr8 (14 HSPs)
chr8 (22-151)||(17944785-17944914)
chr8 (25-110)||(7130617-7130703)
chr8 (44-109)||(35348655-35348720)
chr8 (65-110)||(45156025-45156070)
chr8 (79-142)||(36701347-36701408)
chr8 (65-109)||(39872184-39872228)
chr8 (77-140)||(24190909-24190972)
chr8 (65-108)||(42431682-42431725)
chr8 (65-110)||(7130140-7130185)
chr8 (76-149)||(30201835-30201907)
chr8 (65-110)||(45156370-45156415)
chr8 (22-109)||(1797705-1797793)
chr8 (97-140)||(24994495-24994538)
chr8 (65-115)||(42432039-42432089)
[»] chr2 (25 HSPs)
chr2 (22-115)||(19004773-19004866)
chr2 (20-144)||(38572245-38572369)
chr2 (27-143)||(38571626-38571741)
chr2 (46-139)||(745699-745792)
chr2 (27-108)||(19004907-19004988)
chr2 (67-142)||(6858684-6858759)
chr2 (67-157)||(303419-303509)
chr2 (22-110)||(33710858-33710947)
chr2 (19-110)||(42807429-42807520)
chr2 (27-110)||(44158268-44158351)
chr2 (74-126)||(37940130-37940182)
chr2 (30-112)||(35049524-35049606)
chr2 (60-141)||(30398355-30398434)
chr2 (65-102)||(42882558-42882595)
chr2 (79-143)||(304308-304372)
chr2 (21-111)||(3816310-3816399)
chr2 (96-140)||(5847633-5847677)
chr2 (30-108)||(745286-745366)
chr2 (65-110)||(6402359-6402404)
chr2 (69-110)||(24582452-24582493)
chr2 (96-140)||(4865561-4865604)
chr2 (74-110)||(6610282-6610318)
chr2 (74-142)||(26424973-26425041)
chr2 (60-140)||(30398254-30398334)
chr2 (67-115)||(42808584-42808632)
[»] scaffold0007 (2 HSPs)
scaffold0007 (30-110)||(186921-187001)
scaffold0007 (27-87)||(187419-187479)
[»] chr1 (14 HSPs)
chr1 (22-90)||(44527928-44527996)
chr1 (82-144)||(14614395-14614457)
chr1 (21-92)||(24313796-24313867)
chr1 (20-114)||(37919672-37919767)
chr1 (22-103)||(42294508-42294590)
chr1 (99-144)||(43514854-43514899)
chr1 (64-144)||(52690165-52690245)
chr1 (65-104)||(32713639-32713678)
chr1 (54-92)||(24314455-24314493)
chr1 (65-99)||(40198815-40198849)
chr1 (65-110)||(11434755-11434800)
chr1 (69-110)||(32713215-32713256)
chr1 (65-110)||(43625570-43625614)
chr1 (73-142)||(46150401-46150470)
[»] chr5 (22 HSPs)
chr5 (24-151)||(7633964-7634090)
chr5 (22-91)||(29303586-29303655)
chr5 (20-144)||(41363027-41363148)
chr5 (65-150)||(7633522-7633607)
chr5 (65-110)||(25994944-25994989)
chr5 (65-115)||(7732843-7732893)
chr5 (22-108)||(6408606-6408692)
chr5 (65-110)||(25868116-25868161)
chr5 (65-110)||(25868505-25868550)
chr5 (65-143)||(32804856-32804934)
chr5 (290-324)||(34505486-34505520)
chr5 (65-110)||(14410246-14410291)
chr5 (65-110)||(25994554-25994599)
chr5 (77-121)||(5655319-5655363)
chr5 (72-144)||(15106363-15106435)
chr5 (65-108)||(14410769-14410812)
chr5 (97-140)||(41048753-41048796)
chr5 (97-138)||(7148390-7148431)
chr5 (100-141)||(8736607-8736648)
chr5 (65-110)||(17854725-17854770)
chr5 (65-106)||(26093042-26093083)
chr5 (96-140)||(17476088-17476131)
[»] scaffold1107 (1 HSPs)
scaffold1107 (65-110)||(1922-1967)
[»] scaffold0027 (1 HSPs)
scaffold0027 (65-109)||(49228-49272)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 113 - 270
Target Start/End: Complemental strand, 42628186 - 42628029
Alignment:
Q  113 ggttataaacccaacgtgagttaactcacgctcgtttattttccacagaaatccataatccactgggatttggcgaactacaaccgttagattagcacta 212  Q
    ||||||||| ||| ||||||||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||     
T  42628186 ggttataaatccagcgtgagttaactcacgctaatttattttccacagcaatccataatccattgggatttggcgaactacaaccgttagattagccctg 42628087  T
Q  213 gtagccatggtatcttagattatctatttagactagtttttatatttcttattcatta 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42628086 gtagccatggtatcttagattatctatttagactagtttttatatttcttattcatta 42628029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 42629286 - 42629190
Alignment:
Q  26 ttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaac 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||    
T  42629286 ttagttaactaacgcatgtgtaaatcatacatgacttaattttacacatgcatgacttaagtcacgctgcatgagttaactcacgcatgttataaac 42629190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 36653817 - 36653695
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaa 121  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||| | |||||||||||||||||||||| | ||||||||||| | ||||  || |    
T  36653817 tgcgttagttaactaacgcatgtgtaaatcaaacgtgacttaattttatatatgcgtgacttaagtcacgctgcaagagttaactcatgcaggtgttata 36653718  T
Q  122 cccaacgtgagttaactcacgct 144  Q
     ||| ||||||||||||||||||    
T  36653717 tccagcgtgagttaactcacgct 36653695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 35595346 - 35595231
Alignment:
Q  26 ttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaaccca 125  Q
    |||||||||||||| | ||||||| || | |||| ||||||||||| || || |||||||||||||| | ||||||||||||||||||||  || ||||     
T  35595346 ttagttaactaacgcaagtgtaaaacaaatatgatttaattttacatatacgggacttaagtcacgccgcatgagttaactcacgtaggtgttatacccc 35595247  T
Q  126 acgtgagttaactcac 141  Q
    |  |||||||||||||    
T  35595246 atatgagttaactcac 35595231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 31882974 - 31882911
Alignment:
Q  27 tagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcac 90  Q
    ||||||||||||| |||||||||  | ||||| |||||||||||||||||||||||||||||||    
T  31882974 tagttaactaacgcatgtgtaaaataaacatgtcttaattttacacatgcgtgacttaagtcac 31882911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 42627752 - 42627715
Alignment:
Q  260 cttattcattatcattatttgtttcgctatataataac 297  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42627752 cttattcattatcattatttgtttcgctatataataac 42627715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 16488224 - 16488174
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggt 115  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||| ||||    
T  16488224 ttttacacatgtgtgacttaagtcacgctgcatgagttaattcacgcaggt 16488174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 13608555 - 13608621
Alignment:
Q  77 gtgacttaagtcacgct--gtatgagttaactcacgtaggttataaacccaacgtgagttaactcac 141  Q
    |||||||||||||||||  |  |||||||||||||| ||||| |||||||| ||||| |||||||||    
T  13608555 gtgacttaagtcacgctcagcgtgagttaactcacgcaggttgtaaacccatcgtgacttaactcac 13608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 30665200 - 30665229
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctg 94  Q
    ||||||||||||||||||||||||||||||    
T  30665200 ttttacacatgcgtgacttaagtcacgctg 30665229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 42627534 - 42627602
Alignment:
Q  99 agttaactcacgtaggttataaacccaacgtgagttaactcacgctcgtttattttccacagaaatccat 168  Q
    ||||||| |||| | ||||||||| || ||||||||||||||| || |||||||||||| || |||||||    
T  42627534 agttaacccacgcaagttataaactcagcgtgagttaactcacact-gtttattttccatagcaatccat 42627602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 30859857 - 30859901
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcac 109  Q
    |||||||||||| ||||||||||||||| |  |||||||||||||    
T  30859857 ttttacacatgcatgacttaagtcacgccgcgtgagttaactcac 30859901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 172 - 296
Target Start/End: Original strand, 46855586 - 46855710
Alignment:
Q  172 ccactgggatttggcgaactacaaccgttagattagcactagtagccatggtatcttagattatctatttagactagtttttatatttcttattcattat 271  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46855586 ccactgggatttggcgaactacaaccgttagattagcactggtagccatggtatcttagattatctatttagactagttttcatatttcttattcattat 46855685  T
Q  272 cattatttgtttcgctatataataa 296  Q
    |||||||||||||||||||||||||    
T  46855686 cattatttgtttcgctatataataa 46855710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 39708351 - 39708230
Alignment:
Q  23 gcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaac 122  Q
    ||||||||||||||||| |||||||||||| |  ||||||||||||| |||||| |||||||||| ||||   |||||||||| |||| | ||  ||  |    
T  39708351 gcgttagttaactaacgcatgtgtaaatcaaatgtgacttaattttatacatgcatgacttaagttacgccacatgagttaacccacgcatgtgttattc 39708252  T
Q  123 ccaacgtgagttaactcacgct 144  Q
    || |||||||||||||||||||    
T  39708251 cccacgtgagttaactcacgct 39708230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 53038857 - 53038975
Alignment:
Q  25 gttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaaccc 124  Q
    ||||||||||||||| ||||||||| || ||  || ||||||||||| ||| |||||||||||||||| | ||||||||||||| ||  |||||  ||||    
T  53038857 gttagttaactaacgcatgtgtaaaacaaac--gaattaattttacaaatgtgtgacttaagtcacgccgcatgagttaactcaggt--gttat--accc 53038950  T
Q  125 aacgtgagttaactcacgctcgttt 149  Q
    |||||||| ||||||||||| ||||    
T  53038951 aacgtgagctaactcacgctagttt 53038975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 53831428 - 53831360
Alignment:
Q  42 tgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||| |||||| ||||||||| |||||| |||||||||||||| || |||||||||||||||    
T  53831428 tgtgtaaatcaaacatgatttaattttatacatgcatgacttaagtcacgttgcatgagttaactcacg 53831360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 45003345 - 45003414
Alignment:
Q  26 ttagttaactaacgtatgtgtaaatc-atacatgacttaatttt-acacatgcgtgacttaagtcacgct 93  Q
    |||||||||||||| | ||||||| | ||||||||||||||||| ||||||||||||||||| |||||||    
T  45003345 ttagttaactaacggaagtgtaaaactatacatgacttaatttttacacatgcgtgacttaaatcacgct 45003414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 30478483 - 30478532
Alignment:
Q  61 ttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||||||||| | |||| | |||||||||||||||    
T  30478483 ttaattttacacatgcgtgacttaaataacgccgcatgagttaactcacg 30478532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 30259756 - 30259712
Alignment:
Q  96 atgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||    
T  30259756 atgagttaactcttgtaggttataaccccaacgtgagttaactca 30259712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 4041079 - 4041045
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatga 99  Q
    |||||||||||||||||||||||||||||| ||||    
T  4041079 ttttacacatgcgtgacttaagtcacgctgcatga 4041045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 7255032 - 7255002
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaac 127  Q
    |||||||||||||||||||||||||||||||    
T  7255032 tgagttaactcacgtaggttataaacccaac 7255002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 16280991 - 16280946
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||| ||||||||||||||||||| |  ||||||||||||||    
T  16280991 ttttacacttgcgtgacttaagtcacgccgcgtgagttaactcacg 16280946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 41071583 - 41071538
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaacgtgagttaactcacg 142  Q
    |||||||||||||||| |||||||| | ||||||| ||||||||||    
T  41071583 tgagttaactcacgtaagttataaatctaacgtgacttaactcacg 41071538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 1860345 - 1860471
Alignment:
Q  24 cgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacc 123  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||   || |||||||||||| ||||||||||||    
T  1860345 cgttagttaactaacgcatgtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcacgcaacataagttaactcacgcaggttataaacc 1860444  T
Q  124 caacgtgagttaactcacgctcgttta 150  Q
    ||  ||||||||||||||||| |||||    
T  1860445 cagtgtgagttaactcacgctagttta 1860471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 30746590 - 30746487
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaa 121  Q
    |||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  30746590 tgcgttagttaactaacgcacgtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcacgctgtatgatttaactcacgtatcttataaa 30746491  T
Q  122 ccca 125  Q
    ||||    
T  30746490 ccca 30746487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 31778794 - 31778882
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  31778794 tgcgctagttaactaacgcatgtgtaaatcaaacgtgacttaattttacacatgcgtgacttaagtcacgccgcatgagttaactcacg 31778882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 864483 - 864529
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaacgtgagttaactcacgc 143  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  864483 tgagttaactcacgcaggttataaactcaacgtgagttaagtcacgc 864529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 32879700 - 32879745
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||    
T  32879700 ttttacacttgcgtgacttaagtcacgctgcgtgagttaactcacg 32879745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 5449635 - 5449590
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaacgtgagttaactcacgc 143  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||    
T  5449635 tgagttaactcatgtaggttataa-cccagcgtgagttaactcacgc 5449590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 34396935 - 34396981
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaacgtgagttaactcacgc 143  Q
    |||||||||||| ||||||||||| | || |||||||||||||||||    
T  34396935 tgagttaactcatgtaggttataatctcagcgtgagttaactcacgc 34396981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 31779550 - 31779505
Alignment:
Q  35 taacgtatgtgtaaatcatacatgacttaattttacacatgcgtga 80  Q
    ||||| |||||||||| | |||||| ||||||||||||||||||||    
T  31779550 taacgcatgtgtaaattaaacatgatttaattttacacatgcgtga 31779505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 807131 - 807167
Alignment:
Q  74 tgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||| || ||||||||||||||    
T  807131 tgcgtgacttaagtcacgcagtgtgagttaactcacg 807167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 34981468 - 34981587
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaa 121  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| | ||||||||||  | || |||||||||||| | ||||||||    
T  34981468 tgcgttagttaactaacgcatgtgtaaatcaaacatgacttaattttacatatgcgtcagttaagtcacgtcgcataagttaactcacgaatgttataaa 34981567  T
Q  122 cccaacgtgagttaactcac 141  Q
    |||| |||||||||||||||    
T  34981568 cccagcgtgagttaactcac 34981587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 26251445 - 26251531
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactca 108  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26251445 tgcgctagttaactaacgcatgtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcacgccgtatgagttaactca 26251531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 34981999 - 34981916
Alignment:
Q  26 ttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcac 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||| |||||    
T  34981999 ttagttaactaacgtatgtgtaaatcaaacatgacttaattttacacatgtgtgacttaagtcacgccgcatgagttatctcac 34981916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 9957619 - 9957681
Alignment:
Q  82 ttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgct 144  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  9957619 ttaagtcacgcagcatgagttaactcacgcaggttataaacccaacgtacgttaactcacgct 9957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 55863722 - 55863632
Alignment:
Q  19 tcatgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcac 109  Q
    ||||||||||||||| ||||||||||||||| || || | ||||||||||| ||||  |||||||||||||||| | || |||||| ||||    
T  55863722 tcatgcgttagttaattaacgtatgtgtaaaacaaacgtaacttaattttatacatatgtgacttaagtcacgccgcataagttaaatcac 55863632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 55862228 - 55862309
Alignment:
Q  27 tagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactca 108  Q
    ||||||||||||  |||||||||  |||| ||||||||||||||||||  |||||||||||||||| | || ||||||||||    
T  55862228 tagttaactaactcatgtgtaaaatatacgtgacttaattttacacatatgtgacttaagtcacgccgcataagttaactca 55862309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 40361261 - 40361312
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacaca 73  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  40361261 tgcgttaattaactaacgcatgtgtaaatcaaacatgacttaattttacaca 40361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 11661008 - 11660963
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  11661008 ttttacacttgcgtgacttaagtcacgctgtgtgagttaactcacg 11660963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 4675037 - 4675083
Alignment:
Q  60 cttaattttacacatgcgtgacttaagtcacgctgtatgagttaact 106  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||    
T  4675037 cttatttttacacatgcgtgacttaagtcacgctgcatgaattaact 4675083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 19487485 - 19487570
Alignment:
Q  24 cgttagttaactaacgtatgtgtaaatcatacatgacttaatttt-acacatgcgtgacttaagtcacgctgtatgagttaactca 108  Q
    |||||||||||||||  | || ||||  |||| ||||||| |||| ||||||||||||||||| ||||||||  ||||||||||||    
T  19487485 cgttagttaactaacacaagtataaaaaatacgtgacttagtttttacacatgcgtgacttaactcacgctgcgtgagttaactca 19487570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 32304822 - 32304777
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||    
T  32304822 ttttacacatgcgtgacttaagtcatgctgggtgagttaactcacg 32304777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 45548504 - 45548542
Alignment:
Q  76 cgtgacttaagtcacgctgtatgagttaactcacgtagg 114  Q
    |||||||||||||||| || |||||||||||||||||||    
T  45548504 cgtgacttaagtcacgttgcatgagttaactcacgtagg 45548542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 32303916 - 32303961
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||| ||||||||||||||||  | |||||||||||||||    
T  32303916 ttttacacatacgtgacttaagtcacgtcgcatgagttaactcacg 32303961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 40361723 - 40361678
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||||||||||||    ||||||||||||||    
T  40361723 ttttacacatgcgtgacttaagtcacgccacgtgagttaactcacg 40361678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 53260259 - 53260214
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||| |||||||||||||||||||  ||||||||| ||||    
T  53260259 ttttacacatacgtgacttaagtcacgctgcgtgagttaacccacg 53260214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 53214398 - 53214442
Alignment:
Q  92 ctgtatgagttaactcacgtaggttataaacccaacgtgagttaa 136  Q
    |||| |||||||||||||||||||||||||||   ||||||||||    
T  53214398 ctgtgtgagttaactcacgtaggttataaaccatgcgtgagttaa 53214442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 53801394 - 53801437
Alignment:
Q  96 atgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||    
T  53801394 atgagttaactctcgtatgttataa-cccaacgtgagttaactca 53801437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 17944914 - 17944785
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaa 121  Q
    |||||||||||||||||  ||||||||| || || ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||  || |    
T  17944914 tgcgttagttaactaacacatgtgtaaaacaaacgtgacttaattttacacatgtgtgacttaagtaacgctgcatgagttaactcacgcaggtgttata 17944815  T
Q  122 cccaacgtgagttaactcacgctcgtttat 151  Q
    |||  |||||||||||||||||| ||||||    
T  17944814 ccccgcgtgagttaactcacgctagtttat 17944785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 7130703 - 7130617
Alignment:
Q  25 gttagttaactaacgtatgtgtaaatcatacatgacttaatttt-acacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||| | |||||||  ||| | |||||| |||| || ||||||||||||||||||||||| |||||||||||||||    
T  7130703 gttagttaactaacgcaagtgtaaaaaataaacgacttagtttttacgcatgcgtgacttaagtcacgctgcatgagttaactcacg 7130617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 35348655 - 35348720
Alignment:
Q  44 tgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcac 109  Q
    ||||||||| |||| | ||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  35348655 tgtaaatcaaacataatttaattttatacatgcgtgacttaagtcacgctgcatgaattaactcac 35348720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 45156025 - 45156070
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||    
T  45156025 ttttacacatgcgtgacttaaatcacgctgcatgagttaactcacg 45156070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 36701347 - 36701408
Alignment:
Q  79 gacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacg 142  Q
    ||||||||||||||   ||||||||||||||| |||||||||||||  ||||||||||||||||    
T  36701347 gacttaagtcacgcaacatgagttaactcacgcaggttataaaccc--cgtgagttaactcacg 36701408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 39872228 - 39872184
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcac 109  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||    
T  39872228 ttttacacatgtgtgacttaagtcacgctgcatgagttaactcac 39872184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 24190972 - 24190909
Alignment:
Q  77 gtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    ||||||||||||||||||  ||||||||||||||  ||||||||| |  |||||||||||||||    
T  24190972 gtgacttaagtcacgctgcgtgagttaactcacgctggttataaatcatacgtgagttaactca 24190909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 42431682 - 42431725
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactca 108  Q
    ||||||||||||||||||||||||| |||| |||||||||||||    
T  42431682 ttttacacatgcgtgacttaagtcatgctgcatgagttaactca 42431725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 7130140 - 7130185
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||    
T  7130140 ttttatacatgcgtgacttaagtcacgctgcgtgagttaactcacg 7130185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 30201835 - 30201907
Alignment:
Q  76 cgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgctcgttt 149  Q
    ||||| |||||||| ||||| |||||||||||||| ||||||| ||  || |||||||||||||||||| ||||    
T  30201835 cgtgagttaagtcatgctgtgtgagttaactcacgcaggttat-aagtcagcgtgagttaactcacgctggttt 30201907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 45156415 - 45156370
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||    
T  45156415 ttttacacatgcgtgacttaagtcacgctgcttgagttatctcacg 45156370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 1797705 - 1797793
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaatttt-acacatgcgtgacttaagtcacgctgtatgagttaactcac 109  Q
    |||||||||||||||||| |  ||||||    ||||||| ||||||| ||||||| ||||||||||||||||||  | |||||||||||    
T  1797705 tgcgttagttaactaacgcagatgtaaaattaacatgacataatttttacacatgtgtgacttaagtcacgctgcgtaagttaactcac 1797793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 24994495 - 24994538
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||    
T  24994495 tgagttaactcacgcaggttttaaaaccaacgtgagttaactca 24994538  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 42432089 - 42432039
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggt 115  Q
    ||||||| |||||||| ||||||||||||  ||||||||||||||| ||||    
T  42432089 ttttacatatgcgtgatttaagtcacgctacatgagttaactcacgcaggt 42432039  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 19004773 - 19004866
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggt 115  Q
    |||| ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  19004773 tgcgctagttaactaacgcaagtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcacgccgcatgagttaactcacgcaggt 19004866  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 38572369 - 38572245
Alignment:
Q  20 catgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttata 119  Q
    ||||| ||| |||||||| | | |||||||| | ||||| ||||| |||| |||| ||||||||||||||||||| ||||||||| ||||| | ||||||    
T  38572369 catgcattaattaactaatgcaagtgtaaattaaacatgtcttaaatttatacatacgtgacttaagtcacgctgcatgagttaattcacgcatgttata 38572270  T
Q  120 aacccaacgtgagttaactcacgct 144  Q
    |||||| ||||||||||||||||||    
T  38572269 aacccagcgtgagttaactcacgct 38572245  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 38571626 - 38571741
Alignment:
Q  27 tagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaa 126  Q
    |||||||||| || |  ||||||||| ||||| ||||| |||||||||| |||||||||||||||||| |||||||||||| || |||||||||||| ||    
T  38571626 tagttaactagcgcaaatgtaaatcaaacatgtcttaaatttacacatgtgtgacttaagtcacgctgcatgagttaactctcgcaggttataaacctaa 38571725  T
Q  127 cgtgagttaactcacgc 143  Q
     |||| |||||||||||    
T  38571726 agtga-ttaactcacgc 38571741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 745792 - 745699
Alignment:
Q  46 taaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactc 139  Q
    ||||||| ||||| ||| | ||||||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||| || ||||||||||    
T  745792 taaatcaaacatgtctttaatttacacatgcgtaacttaaatcacgttgtatgagttaactcacgcaggttataaacccagcgcgagttaactc 745699  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 19004988 - 19004907
Alignment:
Q  27 tagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactca 108  Q
    ||||||||||||| | |||||||||| || ||||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  19004988 tagttaactaacgcaagtgtaaatcaaacttgacttaattttacacatgcgtgacttaaatcacgccgcatgagttaactca 19004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 6858684 - 6858759
Alignment:
Q  67 ttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacg 142  Q
    |||| |||| |||||||||||||||| || |||||||||||||||||||||||||||   ||||||||||||||||    
T  6858684 ttactcatgtgtgacttaagtcacgcagtgtgagttaactcacgtaggttataaaccttgcgtgagttaactcacg 6858759  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 303419 - 303509
Alignment:
Q  67 ttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgctcgtttattttcca 157  Q
    ||||||||| |||||||||||||||| | |||| |||||||||| ||||  || |||| ||||||||||||||||||| |||||| |||||    
T  303419 ttacacatgtgtgacttaagtcacgccgcatgaattaactcacgcaggtgttataccccacgtgagttaactcacgctggtttatattcca 303509  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 33710858 - 33710947
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaatttt-acacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||| ||||||||||||| | |||||||  |||| ||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  33710858 tgcgctagttaactaacgcaagtgtaaaaaatacgtgagttaatttttacacatgcgtgacttaagtcacgctgcgtgagttaactcacg 33710947  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 42807429 - 42807520
Alignment:
Q  19 tcatgcgttagttaactaacgtatgtgtaaatcatacatgacttaatttt--acacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||||| | |||||||  | |||||||||| ||||  |||||| ||||||||||||||||| | |||||||||||||||    
T  42807429 tcatgcgttagttaactaacgcaagtgtaaa--aaacatgacttagttttttacacatacgtgacttaagtcacgccgcatgagttaactcacg 42807520  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 44158268 - 44158351
Alignment:
Q  27 tagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||  |||||||||||| || ||| ||||||||||||||| | ||||||||| |||| | |||||||||||||||    
T  44158268 tagttaactaacacatgtgtaaatcaaacgtgaattaattttacacatgtgcgacttaagttacgccgcatgagttaactcacg 44158351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 37940182 - 37940130
Alignment:
Q  74 tgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaa 126  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  37940182 tgcgtgacttaagtcacgctacatgagttaactcacgcaggttataaacccaa 37940130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 35049524 - 35049606
Alignment:
Q  30 ttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgta 112  Q
    |||||||||| |||||||||||| || ||| |||||||||||||| || ||||||||| | || | ||||||||||| |||||    
T  35049524 ttaactaacgcatgtgtaaatcaaacgtgatttaattttacacatacgcgacttaagttatgccgcatgagttaacttacgta 35049606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 30398434 - 30398355
Alignment:
Q  60 cttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcac 141  Q
    |||||||||| |||||||||||||||||||||  | ||||||||||||||| ||||  || | ||  |||||||||||||||    
T  30398434 cttaattttatacatgcgtgacttaagtcacg--gcatgagttaactcacgcaggtgttacatcccgcgtgagttaactcac 30398355  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 42882558 - 42882595
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagtt 102  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  42882558 ttttacacatgcgtgacttaagtcacgctgtgtgagtt 42882595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 304372 - 304308
Alignment:
Q  79 gacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgc 143  Q
    |||||||||||||||| ||||||||||||||| ||||  || ||||  ||||||||||| |||||    
T  304372 gacttaagtcacgctgcatgagttaactcacgcaggtgttacaccctgcgtgagttaacgcacgc 304308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 3816399 - 3816310
Alignment:
Q  21 atgcgttagttaactaacgtatgtgtaaatcatacatgacttaatttt-acacatgcgtgacttaagtcacgctgtatgagttaactcacgt 111  Q
    |||||||| |||||||||| | |||||||  | |  |||||||||||| ||| ||| ||||||||||||||||||  |||||||||||||||    
T  3816399 atgcgttaattaactaacgcaagtgtaaa--aaaattgacttaatttttacatatgtgtgacttaagtcacgctgcgtgagttaactcacgt 3816310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 5847633 - 5847677
Alignment:
Q  96 atgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||    
T  5847633 atgagttaactcacgcaggttataaactcagcgtgagttaactca 5847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 745286 - 745366
Alignment:
Q  30 ttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagt--cacgctgtatgagttaactca 108  Q
    ||||||| |||| |||||||||| | ||  ||||| ||||||||||||| ||||||||  |||| || |||||||||||||    
T  745286 ttaactagcgtaagtgtaaatcaaatatatcttaaatttacacatgcgtaacttaagtcacacgttgcatgagttaactca 745366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 6402404 - 6402359
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||| ||  ||||||||||||||| |||||||||||||||    
T  6402404 ttttacacatacgcaacttaagtcacgctgcatgagttaactcacg 6402359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 24582493 - 24582452
Alignment:
Q  69 acacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||| ||||||| ||||||||||||| |||||||||||||||    
T  24582493 acacttgcgtgagttaagtcacgctgcatgagttaactcacg 24582452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 4865604 - 4865561
Alignment:
Q  96 atgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  4865604 atgagttaactcaagtaggttat-aacccagcgtgagttaactca 4865561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 6610282 - 6610318
Alignment:
Q  74 tgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  6610282 tgcgtgagttaactcacgctgtatgagttaactcacg 6610318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 26424973 - 26425041
Alignment:
Q  74 tgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacg 142  Q
    ||||||| ||||||||||| |  ||||||||||| || ||||||||||||   | ||||||||||||||    
T  26424973 tgcgtgatttaagtcacgccgcgtgagttaactcgcgcaggttataaaccttgcttgagttaactcacg 26425041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 30398254 - 30398334
Alignment:
Q  60 cttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    ||||||||||||  |||| ||||||||||| || | ||||||||||||||| ||||  || ||||  | ||||||||||||    
T  30398254 cttaattttacatgtgcgcgacttaagtcatgccgcatgagttaactcacgcaggtgttacaccccgcatgagttaactca 30398334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 42808632 - 42808584
Alignment:
Q  67 ttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggt 115  Q
    |||||||||||||||||||||||||| | || |||||||| ||| ||||    
T  42808632 ttacacatgcgtgacttaagtcacgcagcattagttaactgacgcaggt 42808584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 186921 - 187001
Alignment:
Q  30 ttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  186921 ttaactaacgtatgtgtaaatcaaacatgacttaattttacacatgtgtgacttaagtcacgttgcatgagttaactcacg 187001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 187479 - 187419
Alignment:
Q  27 tagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagt 87  Q
    ||||||||||||| |||||||||||| |||||| || ||||||||||||| ||||||||||    
T  187479 tagttaactaacgcatgtgtaaatcaaacatgattttattttacacatgcatgacttaagt 187419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 44527928 - 44527996
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcac 90  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44527928 tgcgttagttaactaacgcatgtgtaaatcaaacatgacttaattttacacatgcgtgacttaagtcac 44527996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 14614457 - 14614395
Alignment:
Q  82 ttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgct 144  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  14614457 ttaagtcacgcagtatgagttaactcacgcaggttataaacccagcgtgagttaactcacgct 14614395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 24313796 - 24313867
Alignment:
Q  21 atgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgc 92  Q
    |||| |||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||| ||||||    
T  24313796 atgcattagttaactaacgcatgtgtaaatcaaacgtgacttaattttacacatgcgtaacttaaatcacgc 24313867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 37919672 - 37919767
Alignment:
Q  20 catgcgttagttaactaacgtatgtgtaaatcatacatgactta-attttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtagg 114  Q
    |||||| |||||||||||||||||||||||    |||| |||||  ||||||||||||||||||||||||| ||   ||| ||||| |||||||||    
T  37919672 catgcgctagttaactaacgtatgtgtaaaattaacataacttagtttttacacatgcgtgacttaagtcatgcaacatgggttaattcacgtagg 37919767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 42294590 - 42294508
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaatttt-acacatgcgtgacttaagtcacgctgtatgagtta 103  Q
    |||||||||||| || || | |||||||  |||||||||||| |||| ||||||| ||||||||||||||||||  |||||||    
T  42294590 tgcgttagttaattagcgcaagtgtaaaaaatacatgacttagtttttacacatgtgtgacttaagtcacgctgcgtgagtta 42294508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 43514899 - 43514854
Alignment:
Q  99 agttaactcacgtaggttataaacccaacgtgagttaactcacgct 144  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||    
T  43514899 agttaactcacgtaggttataaactctgcgtgagttaactcacgct 43514854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 52690245 - 52690165
Alignment:
Q  64 attttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgct 144  Q
    |||||||||||| |||||||||||||||    ||||||||||||||| ||||  || ||||   |||||||||||||||||    
T  52690245 attttacacatgtgtgacttaagtcacgtcacatgagttaactcacgcaggtgttacaccccgggtgagttaactcacgct 52690165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 32713678 - 32713639
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaa 104  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  32713678 ttttacacatgcgtgacgtaagtcacgctggatgagttaa 32713639  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 24314493 - 24314455
Alignment:
Q  54 acatgacttaattttacacatgcgtgacttaagtcacgc 92  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  24314493 acatgacttaattttacacatatgtgacttaagtcacgc 24314455  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 40198815 - 40198849
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatga 99  Q
    |||||||||||||||||||||||||||||| ||||    
T  40198815 ttttacacatgcgtgacttaagtcacgctgcatga 40198849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 11434755 - 11434800
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||||| ||||||||||||| |||  ||||||||||||||    
T  11434755 ttttacacatgcctgacttaagtcacactgcgtgagttaactcacg 11434800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 32713215 - 32713256
Alignment:
Q  69 acacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||| |||||||||||||||||||  ||||||||||||||    
T  32713215 acacatacgtgacttaagtcacgctgcgtgagttaactcacg 32713256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 43625614 - 43625570
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||    
T  43625614 ttttacacatgcg-gacttaagtcacgccgcatgagttaactcacg 43625570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 46150470 - 46150401
Alignment:
Q  73 atgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacg 142  Q
    |||||| |||||||||||||||  |||||||||||||| | |||||||| |   ||||| ||||||||||    
T  46150470 atgcgtcacttaagtcacgctgcgtgagttaactcacgcatgttataaatcttgcgtgaattaactcacg 46150401  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 7634090 - 7633964
Alignment:
Q  24 cgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacc 123  Q
    |||||||||||||||| |||||||||| | |||| | |||||||||||||  | ||||||||||||||| | || |||||||||||| ||||||||||||    
T  7634090 cgttagttaactaacgcatgtgtaaattaaacataagttaattttacacaa-catgacttaagtcacgcagcataagttaactcacgcaggttataaacc 7633992  T
Q  124 caacgtgagttaactcacgctcgtttat 151  Q
    |||| | |||||| ||||||| ||||||    
T  7633991 caacataagttaattcacgctagtttat 7633964  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 29303655 - 29303586
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacg 91  Q
    |||| ||||||||||||| |||||||||||| |||| |||||||||||||||| || |||||||||||||    
T  29303655 tgcgctagttaactaacgcatgtgtaaatcaaacattacttaattttacacatacgcgacttaagtcacg 29303586  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 41363148 - 41363027
Alignment:
Q  20 catgcgttagttaactaacgtatgtgtaaatcatacatgacttaattttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttata 119  Q
    |||||||||||||||||||  |  | ||||||| ||||| ||||| ||||||||  | |||||||| ||||| ||||||||||||||| |  || || ||    
T  41363148 catgcgttagttaactaacacacatataaatcaaacatgtcttaaatttacaca--catgacttaaatcacgttgtatgagttaactcgcacagttt-ta 41363052  T
Q  120 aacccaacgtgagttaactcacgct 144  Q
    |||||||||||||||||||||||||    
T  41363051 aacccaacgtgagttaactcacgct 41363027  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 7633522 - 7633607
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgctcgttta 150  Q
    ||||| |||| ||||||||||||||||| | ||||||||||||||  | ||||||||||||| |||  |||||||||||| |||||    
T  7633522 ttttatacatacgtgacttaagtcacgcagcatgagttaactcacacaagttataaacccaatgtggattaactcacgctagttta 7633607  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 25994989 - 25994944
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  25994989 ttttacacatgcgtgacttaagtcacgctgcatgagttaactcacg 25994944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 7732893 - 7732843
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggt 115  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  7732893 ttttacacatgcgtgacttaagtcacgccacatgagttaactcacgtaggt 7732843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 6408606 - 6408692
Alignment:
Q  22 tgcgttagttaactaacgtatgtgtaaatcatacatgacttaatttt--acacatgcgtgacttaagtcacgctgtatgagttaactca 108  Q
    |||||||||||||||||||| | |||||  | || ||||||||||||  |||||||||||||||||||||||||| || ||||||||||    
T  6408606 tgcgttagttaactaacgtaagcgtaaaaaa-acgtgacttaattttttacacatgcgtgacttaagtcacgctgcat-agttaactca 6408692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 25868116 - 25868161
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||    
T  25868116 ttttacacatgtgtgacttaagtcacgctgcatgagttaactcacg 25868161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 25868550 - 25868505
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  25868550 ttttacacatgcgtgacttaagtcacgctgcataagttaactcacg 25868505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 32804934 - 32804856
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgc 143  Q
    ||||||||||| |||||||||||||||| |  |||||||||||||| || |  || ||||  |||||||||||||||||    
T  32804934 ttttacacatgtgtgacttaagtcacgccgcgtgagttaactcacgcagatgttacaccccgcgtgagttaactcacgc 32804856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 34505486 - 34505520
Alignment:
Q  290 ataataactagatccccaacccgtgctgacgcacg 324  Q
    |||||||||||||||||||||||||||||||||||    
T  34505486 ataataactagatccccaacccgtgctgacgcacg 34505520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 14410246 - 14410291
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||    
T  14410246 ttttatacatgcgtgacttaagtcacgctgcgtgagttaactcacg 14410291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 25994554 - 25994599
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||    
T  25994554 ttttacacatgcgtgacttaagtcacgccgcctgagttaactcacg 25994599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 5655319 - 5655363
Alignment:
Q  77 gtgacttaagtcacgctgtatgagttaactcacgtaggttataaa 121  Q
    |||||||||||||||||||  |||||||||||| |||||||||||    
T  5655319 gtgacttaagtcacgctgtgcgagttaactcacataggttataaa 5655363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 15106435 - 15106363
Alignment:
Q  72 catgcgtgacttaagtcacgctgtatgagttaactcacgtaggttataaacccaacgtgagttaactcacgct 144  Q
    ||||||||||||||||||||  | |||||||||||||| || | |||||  ||  ||||||||||||||||||    
T  15106435 catgcgtgacttaagtcacggagcatgagttaactcacataaggtataacacctgcgtgagttaactcacgct 15106363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 14410812 - 14410769
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactca 108  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||    
T  14410812 ttttacacatgtgtgacttaagtcacgctgcgtgagttaactca 14410769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 41048796 - 41048753
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    |||||||||||| || |||||||| |||||||||||||||||||    
T  41048796 tgagttaactcatgtcggttataaccccaacgtgagttaactca 41048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 7148431 - 7148390
Alignment:
Q  97 tgagttaactcacgtaggttataaacccaacgtgagttaact 138  Q
    |||||||||||| ||||||||||| |||| ||||||||||||    
T  7148431 tgagttaactcatgtaggttataaccccagcgtgagttaact 7148390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 8736648 - 8736607
Alignment:
Q  100 gttaactcacgtaggttataaacccaacgtgagttaactcac 141  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  8736648 gttaactcgcgcaggttataaacccaacgtgacttaactcac 8736607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 17854770 - 17854725
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    |||||||||||||||||||| ||||| |||  ||||||||||||||    
T  17854770 ttttacacatgcgtgacttaggtcacactgcgtgagttaactcacg 17854725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 26093083 - 26093042
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaact 106  Q
    ||||||||||| |||||||||||||||| |||||| ||||||    
T  26093083 ttttacacatgtgtgacttaagtcacgccgtatgaattaact 26093042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 17476088 - 17476131
Alignment:
Q  96 atgagttaactcacgtaggttataaacccaacgtgagttaactca 140  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||    
T  17476088 atgagttaactcacgtaggttat-aatccagcgtgagttaactca 17476131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 1967 - 1922
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcacg 110  Q
    ||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  1967 ttttacagatgcgtgacttaagtcacgttgcgtgagttaactcacg 1922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 49228 - 49272
Alignment:
Q  65 ttttacacatgcgtgacttaagtcacgctgtatgagttaactcac 109  Q
    |||||||||||| |||||||| |||||| | ||||||||||||||    
T  49228 ttttacacatgcatgacttaaatcacgccgcatgagttaactcac 49272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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