View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_high_2 (Length: 972)
Name: NF7144_high_2
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 387 - 761
Target Start/End: Original strand, 52318412 - 52318787
Alignment:
| Q |
387 |
ttccactaatactagtatattaaaaacatatgttgcagcttagtttctctccggatacaagtataccagaaaaggaggctgcacttatagagaacaaggc |
486 |
Q |
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| T |
52318412 |
ttccactaatactagtatattaaaaacatatgttgcagcttagtttctctcctgatacaagtatacctgaaaaggaggctgcacttattgagaacaaggc |
52318511 |
T |
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| Q |
487 |
agtttcatcagcagtgttggagactatgatcggcgagcacgctgtttcccctgatcttaagcgctgtttggctgcaagattaccggcgttgttgaacgag |
586 |
Q |
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| T |
52318512 |
agtttcatcagcagtgttggagactatgatcggcgagcacgctgtttcccctgatcttaagcgctgtttggctgcaagattaccggcgttgttgaacgag |
52318611 |
T |
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| Q |
587 |
ggtgctttcaagattggaaactgatcgatcattatactcactcctatatcactacatttccaaaagcttgcagcacaagaatgagaccatg-gacnnnnn |
685 |
Q |
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| T |
52318612 |
ggtgctttcaagattggaaactgatcgatcattatactcactcctatatcactacatttccaaaagcttgcagcacaagaatgagaccatgtcacttttt |
52318711 |
T |
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| Q |
686 |
nnaagtctaaacgtttaattttttgtatatctatttaccttcttattagtatcaataatatgaaatgaaaaatctt |
761 |
Q |
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| T |
52318712 |
ttaagtctaaacgtttaattttttgtatatctatttaccttcttattagtatcaataatatgaaatgaaagatctt |
52318787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 88 - 388
Target Start/End: Original strand, 52318089 - 52318389
Alignment:
| Q |
88 |
taaattgataatgttttaggtccctttgaaaagttaattagagggtcaaagattagggaattgagtggtcctgagtactcaaggaaggttatggagaact |
187 |
Q |
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| T |
52318089 |
taaattgataatgttttaggtccctttgaaaagttaattagagggtcaaagattagggaattgagtggtcctgagtactcaaggaaggttatggagaact |
52318188 |
T |
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| Q |
188 |
gtgtagcacacttgaaatcagttggaacttatggagatgcagaagctgaagctatgcaaaaatttgctgaagctttcaagcctattaattttccacctgg |
287 |
Q |
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| T |
52318189 |
gtgtggcacacttgaaatcagttggaacttatggagatgcagaagctgaagctatgcaaaaatttgctgaagctttcaagcctattaattttccacctgg |
52318288 |
T |
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| Q |
288 |
tgcctctgttttctacaggcaatcacctgatggaatattaggggttagtaataatgccaattaattctgtttcttaactattttaattgagttttactgt |
387 |
Q |
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| T |
52318289 |
tgcctctgttttctacaggcaatcacctgatggaatattaggggttagttataatgccaattaattctgtttcttaactattttaattgaggtttactgt |
52318388 |
T |
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| Q |
388 |
t |
388 |
Q |
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| T |
52318389 |
t |
52318389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 808 - 956
Target Start/End: Original strand, 52318783 - 52318931
Alignment:
| Q |
808 |
atcttcatcaataaaagtgatttgttttgtttgttcaaatcagagtgataaaatgttgatttcaattcattcgagttgtttatttcattttctttggaaa |
907 |
Q |
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| T |
52318783 |
atcttcatcaataaaagtgatttgttttgtttgttcaaatcagagtgataaaatgttgatttcaattcattcgagttgtttatttcattttctttggaaa |
52318882 |
T |
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| Q |
908 |
cagagtaggttgttgaaatcaattttgaatttcttccttgatcctttct |
956 |
Q |
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| T |
52318883 |
cagagtaggttgttaaaatcaattttgaatttcttccttgatcctttct |
52318931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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