View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_high_22 (Length: 208)
Name: NF7144_high_22
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_high_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 42276066 - 42275873
Alignment:
| Q |
15 |
tcatcacgtggccctatcctatccgatttacacaagaagnnnnnnntagaaaaggatattctactaattttgtgatagtctaagttgattccatactgca |
114 |
Q |
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| T |
42276066 |
tcatcatgtggccctatcctatccgatttacacaagaagaaaaaaatagaaaaggatattctactaattttgtgatagtctaagttgattccatactgca |
42275967 |
T |
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| Q |
115 |
taaatgagaagttgaacattgtaaataagaataccgacatgtaatttgtaggcatccatacgtgtccaataatattgtccaaattggcaaaggc |
208 |
Q |
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| T |
42275966 |
taaatgagaagttcaaccttgtaaataagaataccgacatgtaatttgtaggcatccatacgtgtccaataatattgtccaaattggcaaaggc |
42275873 |
T |
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