View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_high_3 (Length: 721)
Name: NF7144_high_3
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 324 - 710
Target Start/End: Complemental strand, 1548480 - 1548093
Alignment:
| Q |
324 |
attaggcgatttggggcggatcacaataaaggcggactttccaacatatgttactatgcttatttgttatgctcacaagtattataattgcaatcatcat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1548480 |
attaggcgatttggggcggatcacaataaaggcggactttccaacatatgttactatgcttatttgttatgctcacaagtattataattgcaatcatcat |
1548381 |
T |
|
| Q |
424 |
atattgactaatgtttctgttttaatgagtaattagcaa-tgtaaatgtttttctgtatcgtattgtgtatctcggcttcttagctgagaagaatatatc |
522 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1548380 |
atattgactaatgtttcagttttaatgagtaattagcaaatgtaaatgtttttctgtatcgtattgtgtatctcggcttcttagctgagaagaatatatc |
1548281 |
T |
|
| Q |
523 |
acaccacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaa |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1548280 |
acaccacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaa |
1548181 |
T |
|
| Q |
623 |
actggaaagtcaattatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
710 |
Q |
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| T |
1548180 |
actggaaagtcaattatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
1548093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 1548891 - 1548590
Alignment:
| Q |
20 |
caattgacatattaacgtaactgaagaaagaatctttcacataattgtaagcatatcaaaaaatttcttttcgctgagaaagaaacataaaagcaaggaa |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1548891 |
caattcacatattaacgtaactgaagaaagaatctttcacataatcgtaagcatatcaaaaaatttcttttcgctgagaaagaaacataaaaacaaggaa |
1548792 |
T |
|
| Q |
120 |
attggttcttaccaaaccatcaaagttgttaaaataattcttccaaattggcattaaattgtgccgtccttgccctccaacatcccaaacagtaaaatca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
1548791 |
attggttcttaccaaaccatcaaagttgttaaaatagttctttcaaattggccttaaattgtgtcgtccttgccctccaacatcccaaacaataaaatca |
1548692 |
T |
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| Q |
220 |
acattcttatactcaactttctccgcattgaaacctgcaaggcaagaaaaattattagtcagatatatcctcaacgcttctcaacaattaaagacacaac |
319 |
Q |
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| T |
1548691 |
acattcttatactcaactttctccgcattgaaacctgcaaggcaagataaattattagtcagatatatcttcaacgcttctcaacaattaaagacacaac |
1548592 |
T |
|
| Q |
320 |
tg |
321 |
Q |
| |
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|| |
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| T |
1548591 |
tg |
1548590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 369 - 710
Target Start/End: Complemental strand, 1544581 - 1544232
Alignment:
| Q |
369 |
atatgttactatgcttatttgttatgctcacaagtattataattgcaatcatcatatattgactaatgtttctgttttaatgagtaattagcaatgtaaa |
468 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
1544581 |
atatgtaactatgcttatttgttatgctcacaagtattataattgcaatcatcatatattgactaatgtttctgttttaaagagtaattagcaatgtgaa |
1544482 |
T |
|
| Q |
469 |
tgtttttctgtatcgtattgtgtatctcggcttcttagctgagaagaatatatcacaccacagacgtaacatccttgagctaccaacgcagaaacaacac |
568 |
Q |
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| T |
1544481 |
tatttttctgtgtcgtactgtgtatctcggcttcttagctgagaagaatatatcacatcacagacctaacatccttgagctaccaacgcagaaacaacac |
1544382 |
T |
|
| Q |
569 |
atgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaac--------tggaaagtcaa-ttatgaagattattagacacacca |
659 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
1544381 |
atgaaatggatgcaatgcaagatgaatcat-atcaatccaaagaaagtttttaaacaataaaattggaaagtcaatttatgaagattattagacacacca |
1544283 |
T |
|
| Q |
660 |
attgtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
710 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1544282 |
acagtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
1544232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 1544921 - 1544682
Alignment:
| Q |
26 |
acatattaacgtaactgaa-gaaagaatctttcacataattgtaagcatatcaaaaaatttcttttcgctgagaaagaaacataaaagcaaggaaattgg |
124 |
Q |
| |
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|||||||||||||| |||| ||| ||||| |||||| | | ||||||||| || ||| |||||||| | ||||||||| |||||||||||| | ||||| |
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| T |
1544921 |
acatattaacgtaagtgaaagaaggaatccttcacaaagtcgtaagcatagcacaaattttctttttgttgagaaagagacataaaagcaaaggaattga |
1544822 |
T |
|
| Q |
125 |
ttcttaccaaaccatcaaagttgttaaaataattcttccaaattggcattaaattgtgccgtccttgccctccaacatcccaaacagtaaaatcaacatt |
224 |
Q |
| |
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|||||||||||||||||| | || ||||||| |||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
1544821 |
ttcttaccaaaccatcaatgctggtaaaatagttcttccaaagtggccttaaattgtgtcgtccttgccctccaacatcccaaaccgtaaaatcaacatt |
1544722 |
T |
|
| Q |
225 |
cttatactcaactttctccgcattgaaacctgcaaggcaa |
264 |
Q |
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||||||| ||||||||||| |||||||||||||||||||| |
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| T |
1544721 |
cttatacccaactttctccacattgaaacctgcaaggcaa |
1544682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 1541098 - 1541028
Alignment:
| Q |
188 |
cttgccctccaacatcccaaacagtaaaatcaacattcttatactcaactttctccgcattgaaacctgca |
258 |
Q |
| |
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|||| ||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||| |
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| T |
1541098 |
cttgtcctccaacatcccaaactgtaaaaacaacattcttatactgaactttctccacattgaaacctgca |
1541028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 29728086 - 29728157
Alignment:
| Q |
188 |
cttgccctccaacatcccaaacagtaaaatcaacattcttatactcaactttctccgcattgaaacctgcaa |
259 |
Q |
| |
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|||| ||||||||||||||||| || ||| |||||||||||||| ||||||||| | ||||||||||||| |
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| T |
29728086 |
cttggcctccaacatcccaaaccgtgaaaataacattcttatactgaactttctcaacgttgaaacctgcaa |
29728157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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