View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_high_4 (Length: 639)
Name: NF7144_high_4
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 13 - 622
Target Start/End: Complemental strand, 249501 - 248896
Alignment:
| Q |
13 |
aatatatacataatatggtagcagctaattttgtcaaagtgcttgattccaatattccacatggatccaattggtttcttccttcttctgacatctctgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249501 |
aatatatacataatatggtagcagctaattttgtcaaagtgcttgattccaatattccacatggatccaattggtttcttccttcttctgacatctctgc |
249402 |
T |
|
| Q |
113 |
tgttcagttatccatttgttctcattgctcaatctcccacaaccactatcagtgttgagggaattgtttattgtgatgcctgctcaaccggcactttctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249401 |
tgttcagttatccatttgttctcattgctcaatctcccacaaccactatcagtgttgagggaattgtttattgtgatgcctgctcaaccggcactttctc |
249302 |
T |
|
| Q |
213 |
taaacacagttatctcttgccaggtatgtatgcatgtatgtaccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtcacttt |
312 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249301 |
taaacacagttatctcttgccaggtatgtatg----tatgtaccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtcacttt |
249206 |
T |
|
| Q |
313 |
tattttcttaaatcattactagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaattgat |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249205 |
tattttcttaaatcattaccagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaattgat |
249106 |
T |
|
| Q |
413 |
tatatatgtcaggtgttgacgttcatatagagtgcagatttagagcaagctcaccaagaaccaacgaacagataaatttctcagtgaacagaacaacaga |
512 |
Q |
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| T |
249105 |
tatatatgtcaggtgttgacgttcatatagagtgcagatttagagcaagctcaccaagaaccaacgaacagataaatttctcagtgaacagaacaacaga |
249006 |
T |
|
| Q |
513 |
cagagagggagcatacaaattagatataccatcagtggatggaactaactgtaaaattgccatggatggtaattcacagattgtgtctctctgccaagca |
612 |
Q |
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| T |
249005 |
cagagagggagcatacaaattagatataccatcagtggatggaactaactgtaaaattgccatggatggtaattcacagattgtgtctctctgccaagca |
248906 |
T |
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| Q |
613 |
accttgatag |
622 |
Q |
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| T |
248905 |
agcttgatag |
248896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 17105300 - 17105255
Alignment:
| Q |
300 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
345 |
Q |
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||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
17105300 |
attcaatcacttttattttcttaaattattattagtgtctatgtgt |
17105255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 26473302 - 26473347
Alignment:
| Q |
300 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
345 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
26473302 |
attcagacacttttattttcttaaactattacaagtgtctatgtgt |
26473347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 28090409 - 28090460
Alignment:
| Q |
300 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgtatgtgt |
351 |
Q |
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|||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
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| T |
28090409 |
attcagtcacttttattttcttaaattgttactagtgtgtgtgtgtgtgtgt |
28090460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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