View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_low_1 (Length: 345)
Name: NF7144_low_1
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 43157280 - 43157621
Alignment:
| Q |
1 |
tactttaaataaactttcaataatatatttctcaa--taggcacacaaatatttaattaacgaggtgtaattagaaccaacggagttgagtctagttgaa |
98 |
Q |
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| T |
43157280 |
tactttaaataaactttcaataatatatttctcaaaataggcacacaaatatttaattaacgaggtgtaattagaaccaacggagttgagtctagttgaa |
43157379 |
T |
|
| Q |
99 |
tgaaccgtagattcttacaatgtgacaaatcaaagctcaatcttgaatgtatgatatacacacnnnnnnnattcaacacacctcaaatatgattacttca |
198 |
Q |
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| T |
43157380 |
tgaactatagattctcacaatgtgacaaatcaaagctcaatcttgaatatatgagatacacactttttttattcaacacacctcaaatatgattacttca |
43157479 |
T |
|
| Q |
199 |
agttgattaaaggaatgttgcgataaactcaatcaaactcttaacttcatatcaacatgtcttttattcaatattttataaatagggtcgaagatcgaat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
43157480 |
agttgattaaaggaatgttgcgataaactcaatcaaactcttaaattcatatcagcatgtcttttattcaatattttacaaatagggtcgaagatggaat |
43157579 |
T |
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| Q |
299 |
ctataagacctcttgaagcaaatgatacac-ttagtataatc |
339 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43157580 |
ctataagacctcttgaagcaaatgatacactttagtataatc |
43157621 |
T |
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