View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_low_11 (Length: 436)
Name: NF7144_low_11
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Complemental strand, 54075555 - 54075148
Alignment:
| Q |
12 |
atcatcatcatcgcttccattatcatacaatatgaaattttccactcccacttttgaatgatacacaacccattccctcaaaaacttcgccacattataa |
111 |
Q |
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| T |
54075555 |
atcatcatcatcgcttccattatcatacaatatgaaattttccactcccacttttgaatgatacacaacccattccctcaaaaacttcgccacattataa |
54075456 |
T |
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| Q |
112 |
accatcgtgcatgcacaaaggaaatatttgggctgggccggaggcccaaacttttgaacagccacgggcttagaattgggtttattgggcctgggagtgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54075455 |
accatcgtgcatgcacaaaggaaatatttgggctgggccggaggcccaaagttttgaactgccacgggcttagaattgggtttattgggcctgggagtgt |
54075356 |
T |
|
| Q |
212 |
aatacgctacggacggaaccacgatgttttctccaataatctcgagggaaacaccaattttggaattcgaacccaaatcagacggatctggatgcaagca |
311 |
Q |
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| T |
54075355 |
aatacgctacggacggaaccacgatgttttctccaataatctcgagggaaactccaatttcggaattcgaacccaaatcagacggatctggatgcaagca |
54075256 |
T |
|
| Q |
312 |
tcggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaacacagttaagctccttcgccggcctgtcgtagccttga |
411 |
Q |
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| T |
54075255 |
tcggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctcctatttggaaaacacagttaagctccttcgccggcctgtcgtagccttga |
54075156 |
T |
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| Q |
412 |
cgatgatt |
419 |
Q |
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| T |
54075155 |
cgatgatt |
54075148 |
T |
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Back To:
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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 48529190 - 48529259
Alignment:
| Q |
292 |
gacggatctggatgcaagcatcggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
361 |
Q |
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| T |
48529190 |
gacggatctggatggaggcatgggaaaacctcttgaatggagcttgtaacggcggtgcaaattccgtctc |
48529259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 34849783 - 34849736
Alignment:
| Q |
314 |
ggaaaacctcttgaacagagcttgtaacggcggtgcgaattccgtctc |
361 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
34849783 |
ggaaaacctcttgaacggagcttgtaacggcggtgcgaattacgtctc |
34849736 |
T |
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