View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_low_12 (Length: 434)
Name: NF7144_low_12
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 38087872 - 38088265
Alignment:
| Q |
19 |
ataaatatctaacttagaagagacaagagattagagaccaaaacttttccattggagacggattcaatttgtctatgctgttagatatggttttgaatta |
118 |
Q |
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| T |
38087872 |
ataaatatctaacttagaagagacaagagattagagaccaaaacttttccattggagacggattcaatttgcctatgctgatagatatggttttgaatta |
38087971 |
T |
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| Q |
119 |
attttctttggttcattgttagagatagaaatgatcttttgttaatattgcaatgagacattctatgtctaaaaattgagacacgctcacatcccttaca |
218 |
Q |
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| T |
38087972 |
attttctttggttcattgttagagatagaaatgatcttttgttaatattgcaatgatacattctatgtctaaaaattgagacacgctcacatcccttaca |
38088071 |
T |
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| Q |
219 |
cctcttagataaagaaaccaaatttttaaggtactttgtgaatacataattgagcagcttaagatatacaatgtgacaattatcagctacttaaattaat |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38088072 |
cctcttagataaagaaaccaaatttttaagctactttgtgaatacataattgagcagcttaagatatacaatgtgacaattatcagctacttaaattaat |
38088171 |
T |
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| Q |
319 |
taaattcaagtcaataaacttgttctttgttaactttgatatttctttctactcatgcaagtacgttaagagaattttagtttttctttctttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
38088172 |
taaattcaagtcaataaacttgttctttgttaactttgatatttctttctactcatgcaaatacgtgaagagaattttagtttttctttctttt |
38088265 |
T |
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