View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_low_17 (Length: 332)
Name: NF7144_low_17
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 5233097 - 5233407
Alignment:
| Q |
1 |
agatttcatataacgtggtactttacaataatgatgtaagtaatcgaagattatgagagtaannnnnnnnnnnnnn---aatctttggataggtatcata |
97 |
Q |
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| T |
5233097 |
agatttcatataacgtggtactttacaataatgatgtaagtaatcgaagattatgagagtaattttttttttttttttaaatctttggataggtatcata |
5233196 |
T |
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| Q |
98 |
ttcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcattggtgaaaagaacataaag |
197 |
Q |
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| T |
5233197 |
ttcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcattggtgaaaagaacataaag |
5233296 |
T |
|
| Q |
198 |
tttgattatttgattctaccaaattaccaaattaatatggtttaaattttatcattatattcacgtgtgtaaagtgtttcatatttaacatcgatgctcc |
297 |
Q |
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| T |
5233297 |
tttgattatttgattctaccaaattaccaaattaatatggtttaaattttattattatattcacgtgtgtaaaatgtttcatatttaacattgatgctcc |
5233396 |
T |
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| Q |
298 |
atctttttctg |
308 |
Q |
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||||||||||| |
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| T |
5233397 |
atctttttctg |
5233407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 17129075 - 17129208
Alignment:
| Q |
79 |
tctttggataggtatcatattcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcat |
178 |
Q |
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| T |
17129075 |
tctttcgacaggtatcatattcctcgatcatggctgaacccaagcgggaacgtcttggttgtgttggaagaatggggaggcgaccctaccggaatttcac |
17129174 |
T |
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| Q |
179 |
tggtgaaaagaacataaagtttgattatttgatt |
212 |
Q |
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| T |
17129175 |
tggtgaaaagaacatgaagtgtgctcatttgatt |
17129208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 52546585 - 52546538
Alignment:
| Q |
145 |
gaagaatggggaggtgaccctactggaatttcattggtgaaaagaaca |
192 |
Q |
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| T |
52546585 |
gaagaatggggaggtgaccctaatggaatatctttggtgaaaagaaca |
52546538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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