View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7144_low_2 (Length: 339)

Name: NF7144_low_2
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7144_low_2
NF7144_low_2
[»] chr1 (1 HSPs)
chr1 (10-320)||(48013943-48014250)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 48013943 - 48014250
Alignment:
Q  10 ttatactagatgaatttaccgtggataaggataaattatctaatagcaaataagttagttcatcacaattttcatggtttcttacggcggaattgataaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  48013943 ttatactagatgaatttaccgtggataaggataaattatctaatagcaaat----tagttcatcacaattttcatggtttcttacggcggaattgataaa 48014038  T
Q  110 cacaacgctaagcaaacatacacagatgattttataacgcgttgagttnnnnnnntaataattaagatttaatgtgatcttgaagaaaaatgtagagcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  48014039 cacaacgctaagcaaacatacacagatgattttataacgcgttgagttaaaaaaataataattaagatttaatgtgatcttgaagaaaaatgtagagcat 48014138  T
Q  210 aa-nnnnnnnnnctttagaattttagtggctcaatagaagtgtcaatgatggttgatttcattgaaaagaaatttacttgtgtctcgtaagactgtgcat 308  Q
    ||          |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||    
T  48014139 aattttttttttctttggaattttagtggctcaatagaagtgtcaatgatggttgatttcattgataagaaatttactcgtgtcttgtaagactgtgcat 48014238  T
Q  309 tcaactacaata 320  Q
    ||||||||||||    
T  48014239 tcaactacaata 48014250  T

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