View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7144_low_20 (Length: 228)

Name: NF7144_low_20
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7144_low_20
NF7144_low_20
[»] chr7 (21 HSPs)
chr7 (1-61)||(45637702-45637762)
chr7 (1-53)||(15329271-15329323)
chr7 (1-52)||(15577865-15577916)
chr7 (1-51)||(4974750-4974800)
chr7 (1-51)||(42611811-42611861)
chr7 (1-51)||(48880942-48880992)
chr7 (1-51)||(3961979-3962029)
chr7 (1-51)||(20010112-20010162)
chr7 (1-51)||(24394972-24395022)
chr7 (1-52)||(35444557-35444608)
chr7 (1-51)||(34482835-34482885)
chr7 (1-54)||(37477095-37477148)
chr7 (170-228)||(18502876-18502934)
chr7 (1-51)||(25167865-25167915)
chr7 (170-228)||(34866250-34866308)
chr7 (1-52)||(18036977-18037028)
chr7 (1-48)||(36790481-36790528)
chr7 (1-51)||(15238382-15238432)
chr7 (1-47)||(29737143-29737189)
chr7 (170-228)||(34703335-34703393)
chr7 (21-60)||(42696074-42696113)
[»] chr8 (42 HSPs)
chr8 (1-63)||(15187548-15187610)
chr8 (1-61)||(26042131-26042191)
chr8 (1-53)||(32064743-32064795)
chr8 (1-57)||(42755057-42755113)
chr8 (1-51)||(34665382-34665432)
chr8 (2-51)||(24211569-24211618)
chr8 (1-53)||(17841865-17841917)
chr8 (1-53)||(40780144-40780196)
chr8 (170-228)||(15268923-15268981)
chr8 (170-228)||(16295633-16295691)
chr8 (170-228)||(16303335-16303393)
chr8 (1-51)||(20091816-20091866)
chr8 (170-228)||(27696527-27696585)
chr8 (1-51)||(32393858-32393908)
chr8 (170-228)||(42180607-42180665)
chr8 (170-228)||(43597129-43597187)
chr8 (4-53)||(1645983-1646032)
chr8 (52-105)||(43597252-43597305)
chr8 (1-48)||(8453837-8453884)
chr8 (1-51)||(35353041-35353091)
chr8 (1-43)||(38016979-38017021)
chr8 (1-59)||(39772816-39772874)
chr8 (1-50)||(14128865-14128914)
chr8 (1-54)||(37986070-37986123)
chr8 (1-53)||(31347797-31347849)
chr8 (170-228)||(3174214-3174272)
chr8 (170-228)||(40953526-40953584)
chr8 (1-54)||(7017880-7017933)
chr8 (1-53)||(6108248-6108300)
chr8 (173-228)||(37246457-37246512)
chr8 (1-52)||(41819793-41819844)
chr8 (1-51)||(27835468-27835518)
chr8 (1-51)||(37132673-37132723)
chr8 (1-46)||(25581254-25581299)
chr8 (1-50)||(27782132-27782181)
chr8 (1-41)||(7021988-7022028)
chr8 (1-53)||(24844873-24844925)
chr8 (7-51)||(30055543-30055587)
chr8 (1-47)||(3890413-3890459)
chr8 (170-228)||(11656155-11656213)
chr8 (1-51)||(30835062-30835111)
chr8 (170-226)||(511936-511992)
[»] chr5 (33 HSPs)
chr5 (1-54)||(6043526-6043579)
chr5 (1-53)||(2477634-2477686)
chr5 (1-61)||(3362769-3362828)
chr5 (1-61)||(11361146-11361206)
chr5 (3-55)||(14138664-14138716)
chr5 (1-52)||(38899741-38899792)
chr5 (1-53)||(4892200-4892252)
chr5 (1-53)||(8145373-8145425)
chr5 (1-51)||(4434022-4434072)
chr5 (1-51)||(12850801-12850851)
chr5 (174-228)||(21091074-21091128)
chr5 (1-51)||(22913069-22913119)
chr5 (170-224)||(25346859-25346913)
chr5 (1-51)||(25398238-25398288)
chr5 (170-228)||(29861164-29861222)
chr5 (170-228)||(31078165-31078223)
chr5 (1-51)||(33584344-33584394)
chr5 (1-51)||(37321808-37321859)
chr5 (1-51)||(3522021-3522071)
chr5 (1-51)||(12614748-12614798)
chr5 (170-228)||(33134383-33134441)
chr5 (173-228)||(33007807-33007862)
chr5 (170-228)||(7883598-7883656)
chr5 (170-228)||(15921992-15922050)
chr5 (1-51)||(17545700-17545750)
chr5 (1-47)||(27481830-27481876)
chr5 (172-226)||(39351568-39351622)
chr5 (170-223)||(13040357-13040410)
chr5 (170-223)||(13110350-13110403)
chr5 (1-39)||(10458409-10458447)
chr5 (14-52)||(13664641-13664679)
chr5 (180-226)||(39705973-39706019)
chr5 (25-54)||(31640964-31640993)
[»] chr6 (23 HSPs)
chr6 (1-53)||(28675146-28675198)
chr6 (1-52)||(33695342-33695393)
chr6 (1-52)||(33696695-33696746)
chr6 (1-54)||(6127272-6127325)
chr6 (1-53)||(18365588-18365640)
chr6 (1-53)||(18370852-18370904)
chr6 (1-53)||(23291099-23291151)
chr6 (170-228)||(9315104-9315162)
chr6 (1-51)||(17176036-17176086)
chr6 (1-51)||(17705480-17705530)
chr6 (1-51)||(25986930-25986980)
chr6 (1-52)||(18889712-18889762)
chr6 (170-228)||(391092-391150)
chr6 (170-228)||(10789230-10789288)
chr6 (170-228)||(12255409-12255467)
chr6 (1-51)||(6031756-6031806)
chr6 (170-228)||(23404783-23404841)
chr6 (18-55)||(2309455-2309492)
chr6 (16-48)||(8515755-8515787)
chr6 (1-45)||(11548603-11548647)
chr6 (170-225)||(32329639-32329694)
chr6 (1-40)||(32702216-32702255)
chr6 (1-53)||(9752260-9752311)
[»] chr4 (33 HSPs)
chr4 (1-53)||(10442804-10442856)
chr4 (1-57)||(22199255-22199311)
chr4 (1-57)||(31078834-31078890)
chr4 (1-56)||(2624832-2624887)
chr4 (1-51)||(36072947-36072997)
chr4 (1-51)||(49387903-49387953)
chr4 (1-53)||(21802337-21802389)
chr4 (1-53)||(24128237-24128289)
chr4 (1-53)||(47290064-47290116)
chr4 (1-52)||(4751445-4751496)
chr4 (1-52)||(33530703-33530754)
chr4 (1-50)||(7745127-7745176)
chr4 (1-54)||(36073347-36073400)
chr4 (1-53)||(24392665-24392717)
chr4 (1-53)||(44893424-44893476)
chr4 (1-59)||(23964480-23964538)
chr4 (170-228)||(34514140-34514198)
chr4 (170-228)||(37910471-37910529)
chr4 (1-51)||(46441844-46441894)
chr4 (175-228)||(5787115-5787168)
chr4 (172-228)||(28115542-28115598)
chr4 (1-53)||(50156593-50156645)
chr4 (1-52)||(53123029-53123081)
chr4 (1-52)||(37934956-37935007)
chr4 (170-228)||(36198623-36198681)
chr4 (170-228)||(44289434-44289492)
chr4 (170-228)||(45498981-45499039)
chr4 (173-226)||(3768035-3768087)
chr4 (1-52)||(44893228-44893280)
chr4 (1-47)||(25063373-25063419)
chr4 (182-226)||(3320017-3320061)
chr4 (25-53)||(30563222-30563250)
chr4 (1-45)||(42671675-42671719)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-51)||(11621-11671)
[»] chr3 (33 HSPs)
chr3 (1-55)||(3574542-3574596)
chr3 (1-51)||(6041884-6041934)
chr3 (1-53)||(2754715-2754767)
chr3 (1-53)||(3137429-3137481)
chr3 (1-53)||(11347266-11347318)
chr3 (1-53)||(34482925-34482977)
chr3 (3-54)||(33113790-33113841)
chr3 (1-52)||(42297352-42297403)
chr3 (1-51)||(3456064-3456114)
chr3 (1-51)||(37217068-37217118)
chr3 (1-51)||(48160905-48160955)
chr3 (1-51)||(8320599-8320649)
chr3 (170-228)||(28457590-28457648)
chr3 (1-51)||(30385011-30385061)
chr3 (170-228)||(40700833-40700891)
chr3 (1-53)||(37522051-37522103)
chr3 (7-54)||(24343544-24343591)
chr3 (170-228)||(54819665-54819724)
chr3 (1-51)||(19650915-19650965)
chr3 (20-58)||(47402630-47402668)
chr3 (1-50)||(9797044-9797093)
chr3 (1-52)||(22426359-22426410)
chr3 (1-52)||(36865042-36865093)
chr3 (1-40)||(42921154-42921193)
chr3 (1-51)||(33145713-33145762)
chr3 (14-48)||(40327878-40327912)
chr3 (1-51)||(41224233-41224283)
chr3 (3-53)||(33839529-33839579)
chr3 (1-47)||(40328052-40328098)
chr3 (178-220)||(44762448-44762490)
chr3 (1-39)||(47738117-47738155)
chr3 (1-42)||(33839756-33839797)
chr3 (170-228)||(21748215-21748272)
[»] chr2 (24 HSPs)
chr2 (1-51)||(21936081-21936131)
chr2 (1-55)||(23268077-23268131)
chr2 (1-53)||(9293591-9293643)
chr2 (1-53)||(13354844-13354896)
chr2 (1-52)||(7475523-7475574)
chr2 (1-52)||(35160756-35160807)
chr2 (1-50)||(10661888-10661937)
chr2 (1-57)||(43330906-43330962)
chr2 (170-228)||(13995546-13995604)
chr2 (170-228)||(27339008-27339066)
chr2 (1-51)||(33380207-33380257)
chr2 (1-53)||(31174849-31174901)
chr2 (1-52)||(14941381-14941432)
chr2 (173-228)||(40619505-40619560)
chr2 (170-228)||(41595537-41595595)
chr2 (173-228)||(13349341-13349396)
chr2 (170-228)||(19695981-19696039)
chr2 (170-228)||(37485870-37485928)
chr2 (1-49)||(21393703-21393751)
chr2 (1-53)||(27847630-27847682)
chr2 (1-51)||(9723405-9723455)
chr2 (1-47)||(22592933-22592979)
chr2 (14-48)||(40262714-40262748)
chr2 (170-223)||(18666056-18666109)
[»] chr1 (27 HSPs)
chr1 (1-51)||(40214988-40215038)
chr1 (1-54)||(19015401-19015454)
chr1 (1-58)||(25973407-25973464)
chr1 (1-53)||(16045813-16045865)
chr1 (1-53)||(18404440-18404492)
chr1 (1-56)||(36966723-36966778)
chr1 (1-51)||(9910308-9910358)
chr1 (170-228)||(37346165-37346223)
chr1 (1-51)||(37821849-37821899)
chr1 (1-51)||(44094698-44094748)
chr1 (1-53)||(25463674-25463726)
chr1 (1-51)||(32000282-32000332)
chr1 (1-53)||(3559615-3559667)
chr1 (172-228)||(17702953-17703009)
chr1 (1-53)||(40273700-40273752)
chr1 (174-226)||(52268237-52268289)
chr1 (1-52)||(41876457-41876508)
chr1 (1-51)||(6883487-6883537)
chr1 (170-228)||(19910309-19910367)
chr1 (14-52)||(34519757-34519795)
chr1 (14-52)||(51620979-51621017)
chr1 (179-228)||(28622728-28622777)
chr1 (170-223)||(50004261-50004314)
chr1 (170-223)||(4952103-4952156)
chr1 (14-51)||(52329319-52329356)
chr1 (24-52)||(9389275-9389303)
chr1 (3-47)||(27523054-27523098)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-53)||(12840-12892)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-53)||(41009-41061)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-51)||(47850-47900)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-53)||(4394-4446)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-55)||(3064-3118)
[»] scaffold0228 (3 HSPs)
scaffold0228 (1-40)||(8413-8452)
scaffold0228 (1-40)||(15995-16034)
scaffold0228 (1-40)||(25947-25986)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45637762 - 45637702
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatatttat 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45637762 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatttttat 45637702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15329323 - 15329271
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15329323 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 15329271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15577865 - 15577916
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15577865 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 15577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4974750 - 4974800
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4974750 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 4974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42611861 - 42611811
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42611861 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48880942 - 48880992
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48880942 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 48880992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3962029 - 3961979
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3962029 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20010112 - 20010162
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20010112 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 20010162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24395022 - 24394972
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24395022 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 24394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35444608 - 35444557
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  35444608 tcattcttgaaattttcttgaaaaaatctttcttaatatatagcattgctct 35444557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34482885 - 34482835
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  34482885 tcattcttaaaattttcttaataaaatctttcttgatatatagcattgctc 34482835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37477095 - 37477148
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  37477095 tcattcttaaatttttcttgagaaaatctttcttgatatatagcattgctctta 37477148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 18502876 - 18502934
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||| ||||||| ||||||| | | |||||||||||||||||||||||||||||    
T  18502876 aacattaatactatcatgtgtttgaagcgtacatgataacaaacaggatatcattataa 18502934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25167865 - 25167915
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||||||    
T  25167865 tcattcttaaaattttcttaaaaaaatctttcttgatatatagcattgctc 25167915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 34866250 - 34866308
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||| || ||||||||||    
T  34866250 aacattaatcttatcatgtgtttgatgcgcacatgataacaaacaagacatcattataa 34866308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18037028 - 18036977
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||| || ||||||||| |||||||||||||||||||| |||||||||    
T  18037028 tcattcttaaatttttcttgaaaaaatctttcttgatatatatcattgctct 18036977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36790481 - 36790528
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattg 48  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||    
T  36790481 tcattcttaaatttttcttgataaaaactttcttgatatatagcattg 36790528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15238432 - 15238382
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  15238432 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 15238382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29737189 - 29737143
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||    
T  29737189 tcattcttaaaattttcttaaaaaaatctttcttgatatatagcatt 29737143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 34703393 - 34703335
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| | ||| | | ||||||||||||||||| |||||||||||||    
T  34703393 aacattaatcctatcatgtattttacgcgcacatgataacaaacatgatatcattataa 34703335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 42696113 - 42696074
Alignment:
Q  21 ataaaatctttcttgatatatagcattgctcttatattta 60  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  42696113 ataaaatctttcttgatatataacattgctcttattttta 42696074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15187610 - 15187548
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatatttatgc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  15187610 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttaaagttatgc 15187548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26042131 - 26042191
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatatttat 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26042131 tcattcttgaaattttcttgataaaatctttcttaatatatagcattgctcttatttttat 26042191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32064795 - 32064743
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32064795 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 32064743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42755057 - 42755113
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatat 57  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42755057 tcattcttgaaattttcttgataaaatctttcttgatatatatcattgctcttatat 42755113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34665432 - 34665382
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665432 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24211569 - 24211618
Alignment:
Q  2 cattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24211569 cattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17841865 - 17841917
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17841865 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 17841917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40780144 - 40780196
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40780144 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 40780196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 15268981 - 15268923
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  15268981 aacattaatcctatcatatgtttggtgtgcacatgataacaaacaagatatcattataa 15268923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 16295691 - 16295633
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16295691 aacattaatcttatcatgtgtttgatgtgcacatgataacaaacaggatatcattataa 16295633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 16303393 - 16303335
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16303393 aacattaatcttatcatgtgtttgatgtgcacatgataacaaacaggatatcattataa 16303335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20091816 - 20091866
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20091816 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 20091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 27696585 - 27696527
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  27696585 aacattaatcctatcatgtgtttaatgtgcacatgataacaaacaggatatcattataa 27696527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32393908 - 32393858
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32393908 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 32393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 42180665 - 42180607
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  42180665 aacattaatcctatcatacgtttgatgcgcacatgataacaaacatgatatcattataa 42180607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 43597187 - 43597129
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  43597187 aacattaatcctatcatatgtttgatgggcacatgataacaaatataatatcattataa 43597129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 1645983 - 1646032
Alignment:
Q  4 ttcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1645983 ttcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 1646032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 43597305 - 43597252
Alignment:
Q  52 ttatatttatgctcacttggattttgttttagtatgagtttgtttgatggtcag 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  43597305 ttatatttatgctcacttggatttcgttttagtatgagtttgtttaatggtcag 43597252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8453884 - 8453837
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattg 48  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8453884 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattg 8453837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35353091 - 35353041
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  35353091 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 35353041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38017021 - 38016979
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatag 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38017021 tcattcttgaaattttcttgataaaatctttcttgatatatag 38016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39772816 - 39772874
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatattt 59  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||    
T  39772816 tcattcttgaaatttttttgataaaatatttcttgatatataacattgctcttttattt 39772874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14128914 - 14128865
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  14128914 tcattcttaaaattttattgataaaatctttcttgatatatagcattgct 14128865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37986070 - 37986123
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  37986070 tcattcttaaaatttttttgataaaatctttcttgatatatagcattactctta 37986123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31347797 - 31347849
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  31347797 tcattcttgaatttttcttgagaaaatatttcttgatatatagcattgctctt 31347849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 3174272 - 3174214
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||  ||||||||||||    
T  3174272 aacattaatcctatcatgtgtttgatgcgtacatgataacaaacataatatcattataa 3174214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 40953584 - 40953526
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||    
T  40953584 aacattaatcatatcatgtgtttgatgcgcacatgataacaaacatgatatcatcataa 40953526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7017880 - 7017933
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    ||||||||||| ||||||| | |||||||||| |||||||||||||||||||||    
T  7017880 tcattcttgaatttttcttaagaaaatctttcatgatatatagcattgctctta 7017933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6108248 - 6108300
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| |||||||||| | |||||||||||||||||||| ||||||||||    
T  6108248 tcattcttaaaattttcttaaaaaaatctttcttgatatataacattgctctt 6108300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 37246512 - 37246457
Alignment:
Q  173 attaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||| |||||| ||||||||  |||||||| ||||||||||||||||||||||    
T  37246512 attaatcttatcatgtgtttgatttgcacatgaaaacaaacaggatatcattataa 37246457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41819793 - 41819844
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||| |||  |||||||||||||||||||||||||||| |||||||||    
T  41819793 tcattcttaaaacattcttgataaaatctttcttgatatataacattgctct 41819844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27835468 - 27835518
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||| |||| |||||| |||||||||||||||||||    
T  27835468 tcattcttgaatttttcttaataagatctttattgatatatagcattgctc 27835518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37132673 - 37132723
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| || ||||||||||||||| ||| |||||||||||||||||||    
T  37132673 tcattcttaaatttttcttgataaaatattttttgatatatagcattgctc 37132723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25581254 - 25581299
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcat 46  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||    
T  25581254 tcattcttgaaattttcttcgtaaaaactttcttgatatatagcat 25581299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27782132 - 27782181
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    ||||| |||||  |||||||||||||| ||||||||||||||||||||||    
T  27782132 tcattattgaatctttcttgataaaatatttcttgatatatagcattgct 27782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7022028 - 7021988
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatat 41  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  7022028 tcattcttgaatttttcttgagaaaatctttcttgatatat 7021988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24844873 - 24844925
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||| ||||||| ||||||| ||||||||||| ||||||| |||||    
T  24844873 tcattcttgaatttttcttaataaaatatttcttgatatgtagcatttctctt 24844925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 30055587 - 30055543
Alignment:
Q  7 ttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||    
T  30055587 ttgaaatttttttgataaaatcttccttggtatatagcattgctc 30055543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3890459 - 3890413
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  3890459 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 3890413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 11656155 - 11656213
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| | ||||||||||||||| | || ||||||||    
T  11656155 aacattaatcatatcatgtgtttgatgcgtacatgataacaaacaaggtaccattataa 11656213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30835062 - 30835111
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| |||| | ||||||||||||||||||||||| ||||||||    
T  30835062 tcattcttgaattttt-tcgataaaatctttcttgatatataacattgctc 30835111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 511992 - 511936
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattat 226  Q
    |||||||||| |||||| ||||||||  |||||||||| |||| | |||||||||||    
T  511992 aacattaatcttatcatgtgtttgattcgcacatgataccaaataagatatcattat 511936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6043526 - 6043579
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6043526 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 6043579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2477686 - 2477634
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2477686 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 2477634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3362828 - 3362769
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatatttat 61  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3362828 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctc-tatatttat 3362769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11361146 - 11361206
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatatttat 61  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  11361146 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcataaatttat 11361206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 14138716 - 14138664
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcattgctcttat 55  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14138716 attcttgaaattttcttgataaaatctttcttgatatataacattgctcttat 14138664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38899741 - 38899792
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38899741 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 38899792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4892252 - 4892200
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  4892252 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctctt 4892200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8145425 - 8145373
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  8145425 tcattcttgaaattttcttgataaaatctttcttgatatataacattcctctt 8145373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4434022 - 4434072
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  4434022 tcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctc 4434072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12850851 - 12850801
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  12850851 tcatttttggaattttcttgataaaatctttcttgatatatagcattgctc 12850801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 21091074 - 21091128
Alignment:
Q  174 ttaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  21091074 ttaatcctatcatgtgtttgatgcgcacatgataacaaacaagatatcattataa 21091128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22913069 - 22913119
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  22913069 tcattcttgaatttttcttgaaaaaatctttcttgatatatagcattgctc 22913119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 25346859 - 25346913
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcatt 224  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  25346859 aacattaatcctatcatgtgtttgatgcgcacatgataacaaataggatatcatt 25346913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25398288 - 25398238
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  25398288 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 25398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 29861222 - 29861164
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  29861222 aacattaatcttatcatgtgtttgatgtgcacatgataacaaacacgatatcattataa 29861164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 31078223 - 31078165
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  31078223 aacattaattctatcatgtgtttgatgcgcacatgataacaaacatgatatcattataa 31078165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33584344 - 33584394
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  33584344 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33584394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37321808 - 37321859
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttctt-gatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  37321808 tcattcttaaaattttcttgataaaatctttcttagatatatagcattgctc 37321859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3522021 - 3522071
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  3522021 tcatttttgaaattttcttgaaaaaatctttcttgatatataacattgctc 3522071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12614748 - 12614798
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  12614748 tcattcttgaatctttcttgataaaatatttcttgatatatagcattgctc 12614798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 33134441 - 33134383
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||| |||||||||||||    
T  33134441 aacattaatcctatcatgtgtttgatgcgcacatgataacgcacatgatatcattataa 33134383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 33007807 - 33007862
Alignment:
Q  173 attaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||| |||||| |||||||||  |||||||||||||||| |||||||||||||    
T  33007807 attaatcatatcatgtgtttgatgcacacatgataacaaacaagatatcattataa 33007862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 7883598 - 7883656
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| |||||||| || || ||||||||||||||||    
T  7883598 aacattaatcatatcatgtgtttgatgcgcacatgaaaataagcaggatatcattataa 7883656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 15921992 - 15922050
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||| ||||||||| | ||||| | ||||||||||||||||| |||||||||||||    
T  15921992 aacattattcctatcatgtatttgaagcgcacatgataacaaacaagatatcattataa 15922050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17545700 - 17545750
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  17545700 tcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 17545750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27481876 - 27481830
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  27481876 tcattcttgaatttttcttgataaaatctttcttaatacatagcatt 27481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 39351622 - 39351568
Alignment:
Q  172 cattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattat 226  Q
    |||||||| |||||| ||||||||| ||||||||||||||| | |||||||||||    
T  39351622 cattaatcatatcatgtgtttgatgcgcacatgataacaaatatgatatcattat 39351568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 13040410 - 13040357
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcat 223  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||  |||||||    
T  13040410 aacatttatcctatcatatgtttgatgcacacatgataacaaacataatatcat 13040357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 13110403 - 13110350
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcat 223  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||  |||||||    
T  13110403 aacatttatcctatcatatgtttgatgcacacatgataacaaacataatatcat 13110350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10458447 - 10458409
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatat 39  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  10458447 tcattcttgaatttttcttgataaaatttttcttgatat 10458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 13664679 - 13664641
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  13664679 tttcttgataaaatctttcttaatatataacattgctct 13664641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 39706019 - 39705973
Alignment:
Q  180 ctatcatatgtttgatgggcacatgataacaaacaggatatcattat 226  Q
    ||||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  39706019 ctatcatatgtttaatgtgcatatgataacaaacaagatatcattat 39705973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 31640964 - 31640993
Alignment:
Q  25 aatctttcttgatatatagcattgctctta 54  Q
    ||||||||||||||||||||||||||||||    
T  31640964 aatctttcttgatatatagcattgctctta 31640993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28675198 - 28675146
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675198 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 28675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33695342 - 33695393
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33695342 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 33695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33696746 - 33696695
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33696746 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 33696695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6127325 - 6127272
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6127325 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctta 6127272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18365588 - 18365640
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18365588 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 18365640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18370852 - 18370904
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18370852 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 18370904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23291099 - 23291151
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23291099 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 23291151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 9315162 - 9315104
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  9315162 aacattaatcctatcatgtgtttgatgcgcacatgataacaaacaagatatcattataa 9315104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17176036 - 17176086
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17176036 tcattcttgaaattttattgataaaatctttcttgatatatagcattgctc 17176086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17705480 - 17705530
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17705480 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 17705530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25986980 - 25986930
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25986980 tcattcttgaaattttcttaataaaatctttcttgatatatagcattgctc 25986930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 18889712 - 18889762
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18889712 tcattcttgaaattttcttgataaa-tctttcttgatatatagcattgctct 18889762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 391092 - 391150
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  391092 aacattaatcttatcatgtgtttgatgtgcacatgataacaaataggatatcattataa 391150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 10789230 - 10789288
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||    
T  10789230 aacattaatcttatcatgtgtttgatgcgaacatgataacaaacaggatatcattataa 10789288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 12255467 - 12255409
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  12255467 aacattaatcttatcatgtgtttgatgcgcacatgataacaaacatgatatcattataa 12255409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6031756 - 6031806
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  6031756 tcattcttaaaattttattgatgaaatctttcttgatatatagcattgctc 6031806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 23404841 - 23404783
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||  |||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  23404841 aacattaatattatcatgtgtttgatgtgcacatgataacaaacacgatatcattataa 23404783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 2309455 - 2309492
Alignment:
Q  18 ttgataaaatctttcttgatatatagcattgctcttat 55  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2309455 ttgataaaatctttcttgatatataacattgctcttat 2309492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 8515755 - 8515787
Alignment:
Q  16 tcttgataaaatctttcttgatatatagcattg 48  Q
    |||||||||||||||||||||||||||||||||    
T  8515755 tcttgataaaatctttcttgatatatagcattg 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11548603 - 11548647
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagca 45  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||    
T  11548603 tcattcttgaatttttcttgagaaaatttttcttgatatatagca 11548647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 32329694 - 32329639
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcatta 225  Q
    |||||||||| |||||| ||||||||  ||||||||||||||| | ||||||||||    
T  32329694 aacattaatcatatcatgtgtttgatacgcacatgataacaaatatgatatcatta 32329639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32702255 - 32702216
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  32702255 tcattcttgaaattttcatgaaaaaatctttcttgatata 32702216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9752260 - 9752311
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||| ||||||||||||  | |||||||||||||| ||||||||||    
T  9752260 tcattcttgaatttttcttgataattt-tttcttgatatataacattgctctt 9752311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10442804 - 10442856
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10442804 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 10442856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22199311 - 22199255
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatat 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22199311 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatatat 22199255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31078834 - 31078890
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31078834 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctaatat 31078890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2624887 - 2624832
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttata 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2624887 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcatata 2624832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36072997 - 36072947
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36072997 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49387903 - 49387953
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49387903 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 49387953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21802337 - 21802389
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21802337 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctctt 21802389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24128289 - 24128237
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24128289 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 24128237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47290116 - 47290064
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47290116 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 47290064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4751496 - 4751445
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4751496 tcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 4751445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33530703 - 33530754
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33530703 tcattcttgaatttttcttgataaaatctttcttgatatatagcattgctct 33530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7745127 - 7745176
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7745127 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 7745176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36073400 - 36073347
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  36073400 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattcctctta 36073347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24392717 - 24392665
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  24392717 tcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctctt 24392665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44893476 - 44893424
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  44893476 tcattcttgaaatttttttgaaaaaatctttcttgatatatagcattgctctt 44893424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23964480 - 23964538
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatattt 59  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  23964480 tcattcttaaaatttttttgataaaatctttcttgatatataacattgctcttttattt 23964538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 34514198 - 34514140
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||||    
T  34514198 aacattaatcatgtcatatgtttgatgcgcacatgataacaaataggatatcattataa 34514140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 37910471 - 37910529
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||    
T  37910471 aacattaatcatatcatgtgtttgatgcacacatgataacaaacaggatatcattataa 37910529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46441894 - 46441844
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  46441894 tcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctc 46441844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 5787115 - 5787168
Alignment:
Q  175 taatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5787115 taatactatcatgtgtttgatgcgcacatgataacaaacaggatatcattataa 5787168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 28115542 - 28115598
Alignment:
Q  172 cattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||    
T  28115542 cattaatcatatcatgtgtttgatggccacatgataacaaacaagatatcattataa 28115598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50156593 - 50156645
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  50156593 tcattcttaaaattttcttgaaaaaatctttcttaatatatagcattgctctt 50156645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 53123081 - 53123029
Alignment:
Q  1 tcattcttgaaattttctt-gataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  53123081 tcattcttgaaattttctttgaaaaaatctttcttgatatatagcattgctct 53123029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37934956 - 37935007
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  37934956 tcattcttgacatttttttgataaaatcttttttgatatatagcattgctct 37935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 36198623 - 36198681
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| ||||||||||||||| | |||||||||||||    
T  36198623 aacattaatcttatcatgtgtttgatgtgcacatgataacaaatatgatatcattataa 36198681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 44289434 - 44289492
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| | |||| ||||||||| ||||||||||||||||| |||||||||||||    
T  44289434 aacattaatcttctcatgtgtttgatgcgcacatgataacaaacatgatatcattataa 44289492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 45498981 - 45499039
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| |||||||||  ||||||||||||||||  ||||||||||||    
T  45498981 aacattaatcatatcatgtgtttgatgcacacatgataacaaacacaatatcattataa 45499039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 3768087 - 3768035
Alignment:
Q  173 attaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattat 226  Q
    |||||||||||||| ||||||||| ||||||||||| ||| |||||||||||||    
T  3768087 attaatcctatcatgtgtttgatgcgcacatgataa-aaaaaggatatcattat 3768035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44893228 - 44893280
Alignment:
Q  1 tcattcttgaaattttctt-gataaaatctttcttgatatatagcattgctct 52  Q
    |||||||||||||||| || || |||||||||||| |||||||||||||||||    
T  44893228 tcattcttgaaattttttttgaaaaaatctttcttaatatatagcattgctct 44893280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25063419 - 25063373
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  25063419 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 25063373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 3320061 - 3320017
Alignment:
Q  182 atcatatgtttgatgggcacatgataacaaacaggatatcattat 226  Q
    ||||||||||||| | ||||||||||||||| | |||||||||||    
T  3320061 atcatatgtttgaggcgcacatgataacaaatatgatatcattat 3320017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 30563250 - 30563222
Alignment:
Q  25 aatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||||||||||||||||    
T  30563250 aatctttcttgatatatagcattgctctt 30563222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42671719 - 42671675
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagca 45  Q
    |||||||| || |||| |||||||||||||| |||||||||||||    
T  42671719 tcattcttaaattttttttgataaaatctttattgatatatagca 42671675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 11671 - 11621
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11671 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 11621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3574542 - 3574596
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttat 55  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3574542 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcttat 3574596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6041934 - 6041884
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6041934 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 6041884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2754767 - 2754715
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2754767 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 2754715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3137429 - 3137481
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3137429 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 3137481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11347318 - 11347266
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11347318 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 11347266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34482925 - 34482977
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34482925 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 34482977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 33113841 - 33113790
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33113841 attcttgaaattttcttaataaaatctttcttgatatatagcattgctctta 33113790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42297403 - 42297352
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42297403 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctct 42297352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3456114 - 3456064
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3456114 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37217068 - 37217118
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37217068 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 37217118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48160955 - 48160905
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48160955 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 48160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8320599 - 8320649
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  8320599 tcattcttaaaattttcttgataaaatctttcttgatatataacattgctc 8320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 28457590 - 28457648
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  28457590 aacatcaatcctatcatatgtttgatgcgcacatgataacaaataagatatcattataa 28457648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30385061 - 30385011
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  30385061 tcatttttgaaattttcttgataaaatctttcttgataaatagcattgctc 30385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 40700833 - 40700891
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| |||||||||  |||||||||||||||| |||||||||||||    
T  40700833 aacattaatcctatcatgtgtttgatgcacacatgataacaaacatgatatcattataa 40700891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37522103 - 37522051
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  37522103 tcattcttaaaattttcttgaaaaaatctttcttgatatatagtattgctctt 37522051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 24343591 - 24343544
Alignment:
Q  7 ttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  24343591 ttgaatttttcttgataaaatctttcttaatatatagcattgctctta 24343544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 54819665 - 54819724
Alignment:
Q  170 aacattaatcctatcatatgtttgatgg-gcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||| |||||||    
T  54819665 aacattaatcctatcatgtgtttgatgtcgcacatgataacaaacaggatattattataa 54819724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19650915 - 19650965
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  19650915 tcattcttaaaattttcttgataaaatctttcttaatatataacattgctc 19650965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 47402630 - 47402668
Alignment:
Q  20 gataaaatctttcttgatatatagcattgctcttatatt 58  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47402630 gataaaatctttcttgatatatagcattgctcttatatt 47402668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9797044 - 9797093
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  9797044 tcattcttgaatttttcttgagaaaatctttcttgatatataacattgct 9797093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22426359 - 22426410
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||| || ||||||||||||||||||||||||| ||||||| |||||||||    
T  22426359 tcatttttaaaattttcttgataaaatctttcttaatatataacattgctct 22426410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36865042 - 36865093
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||| |||||||||| |||||||||| ||| |||||||||||||||||    
T  36865042 tcattcttaaaattttcttaataaaatcttccttaatatatagcattgctct 36865093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42921193 - 42921154
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  42921193 tcattcttaaaattttcttgataaaatctttcttgatata 42921154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33145762 - 33145713
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||||    
T  33145762 tcattcttaaaatttt-ttaataaaatctttcttgatatatagcattgctc 33145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 40327912 - 40327878
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattg 48  Q
    |||||||||||||||||||||||||||||||||||    
T  40327912 tttcttgataaaatctttcttgatatatagcattg 40327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41224283 - 41224233
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  41224283 tcattcttgaatttttcttgagaaaatctttcttaatatatagcagtgctc 41224233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 33839579 - 33839529
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||| || |||| ||||||||||||||||| ||||||| ||||||||||    
T  33839579 attcttaaattttttttgataaaatctttcttaatatataacattgctctt 33839529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40328052 - 40328098
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  40328052 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 40328098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 44762448 - 44762490
Alignment:
Q  178 tcctatcatatgtttgatgggcacatgataacaaacaggatat 220  Q
    |||||||||||||||||||  |||||||||||||||| |||||    
T  44762448 tcctatcatatgtttgatgcacacatgataacaaacatgatat 44762490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47738155 - 47738117
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatat 39  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  47738155 tcattcttgaatatttcttgataaaatctttcttgatat 47738117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33839756 - 33839797
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatata 42  Q
    |||||||||||  ||||||||||||||| |||||||||||||    
T  33839756 tcattcttgaatctttcttgataaaatcattcttgatatata 33839797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 21748215 - 21748272
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaa-caggatatcattataa 228  Q
    |||||||||| |||||| |||||||||  |||||||||| ||| ||||||||||||||||    
T  21748215 aacattaatcatatcatgtgtttgatg--cacatgataaaaaaacaggatatcattataa 21748272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21936131 - 21936081
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936131 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 21936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23268077 - 23268131
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttat 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23268077 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcttat 23268131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9293591 - 9293643
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9293591 tcattcttgaaaatttcttgataaaatctttcttgatatatagcattgctctt 9293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13354896 - 13354844
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13354896 tcattcttgaaattttcttgataaaatctttcttgatatataacattgctctt 13354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7475523 - 7475574
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7475523 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctct 7475574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35160807 - 35160756
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35160807 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctct 35160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10661937 - 10661888
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgct 50  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10661937 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgct 10661888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43330962 - 43330906
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatat 57  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||    
T  43330962 tcattcttgaattttttttgagaaaatctttcttgatatatagcattgctcttatat 43330906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 13995546 - 13995604
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||    
T  13995546 aacattaatcctatcatgtgtttgatgcgcacatgataagaaacatgatatcattataa 13995604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 27339066 - 27339008
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  27339066 aacattaatcatatcatgtgtttgatgcgcacatgataacaaaccggatatcattataa 27339008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33380257 - 33380207
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  33380257 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33380207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31174849 - 31174901
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  31174849 tcattcttgaaattttcttaataaaatctttcttgatatataacattgttctt 31174901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14941381 - 14941432
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  14941381 tcattcttgaatctttcttaataaaatctttcttgatatatagcattgctct 14941432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 40619505 - 40619560
Alignment:
Q  173 attaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  40619505 attaatcttatcatgtgtttgatgtgcacatgataacaaacatgatatcattataa 40619560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 41595595 - 41595537
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||||||| || ||||||||| |||||| |||||||||| |||||||||||||    
T  41595595 aacattaatcctattatgtgtttgatgtgcacataataacaaacatgatatcattataa 41595537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 13349341 - 13349396
Alignment:
Q  173 attaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||||| | ||||||||| ||| ||||||||||||||||||| |||||||    
T  13349341 attaatcctatcgtgtgtttgatgcgcatatgataacaaacaggatattattataa 13349396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 19696039 - 19695981
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| ||| || ||||||||| ||||||||||| ||||| |||||||||||||    
T  19696039 aacattaatcttattatgtgtttgatgtgcacatgataataaacatgatatcattataa 19695981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 37485928 - 37485870
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||  ||| ||||||||    
T  37485928 aacattaatcatatcatgtgtttgatgtgcacatgataacaaacataataccattataa 37485870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21393703 - 21393751
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgc 49  Q
    |||||||| || ||||||||| ||||| |||||||||||||||||||||    
T  21393703 tcattcttaaatttttcttgagaaaatttttcttgatatatagcattgc 21393751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27847682 - 27847630
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||  |||||| |||||||||||||| ||||| ||||||||||||    
T  27847682 tcattcttgaatctttcttaataaaatctttctttatatacagcattgctctt 27847630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9723455 - 9723405
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||| ||  |||||| |||||||||||||| ||||||||||||||||    
T  9723455 tcattcttaaatctttcttaataaaatctttcttaatatatagcattgctc 9723405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22592933 - 22592979
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||||  ||||||||||||||| |||||||||| |||||||    
T  22592933 tcattcttgaatctttcttgataaaatcattcttgatatctagcatt 22592979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 40262714 - 40262748
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattg 48  Q
    ||||||||||||||||||||||||||||| |||||    
T  40262714 tttcttgataaaatctttcttgatatataacattg 40262748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 18666109 - 18666056
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcat 223  Q
    |||||| ||||||||| ||||||||||  ||||||||||||||||  |||||||    
T  18666109 aacatttatcctatcacatgtttgatgcacacatgataacaaacataatatcat 18666056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40215038 - 40214988
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40215038 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 40214988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19015454 - 19015401
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 54  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19015454 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctta 19015401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25973464 - 25973407
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttatatt 58  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  25973464 tcattcttgaaattttcatgataaaatctttcttgatatataacattgctcttatatt 25973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16045813 - 16045865
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16045813 tcattcttgaaattttcttgataaaatctttcttgatatatagcattactctt 16045865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18404492 - 18404440
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18404492 tcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 18404440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36966723 - 36966778
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttata 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  36966723 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcatata 36966778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9910308 - 9910358
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9910308 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 9910358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 37346165 - 37346223
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  37346165 aacattaatcctatcatgtgtttgatgcgcacatgataacaaacatgatatcattataa 37346223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37821849 - 37821899
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37821849 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 37821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44094748 - 44094698
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44094748 tcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 44094698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25463726 - 25463674
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  25463726 tcattcttaaaattttcttcataaaatctttcttgatatatagcattgctctt 25463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32000282 - 32000332
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  32000282 tcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctc 32000332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3559667 - 3559615
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  3559667 tcattcttaaaatttttttgataaaatctttcttgatatatagcattgttctt 3559615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 17703009 - 17702953
Alignment:
Q  172 cattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||| | |||||||  ||||||||||||||||||||||||||||||    
T  17703009 cattaatcctatcatgtttttgatgcacacatgataacaaacaggatatcattataa 17702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40273752 - 40273700
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  40273752 tcattcttgaatttttcttgaaaaaatctttcttgatatctagcattgctctt 40273700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 52268289 - 52268237
Alignment:
Q  174 ttaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattat 226  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  52268289 ttaatcctatcatgtgtttgatgcgcacatgataacaaacaggatataattat 52268237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41876457 - 41876508
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  41876457 tcattcttaaaatttttttgaaaaaatctttcttgatatatagcattgctct 41876508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6883537 - 6883487
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  6883537 tcattcttgaaattttcttaaaaaaatctttcttaatatatagcattgctc 6883487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 19910367 - 19910309
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||||||||||| ||||||||| || |||||||||||||| ||||| |||||||    
T  19910367 aacattaatcctatcatgtgtttgatgcgcccatgataacaaacatgatattattataa 19910309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 34519795 - 34519757
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  34519795 tttcttaataaaatctttcttgatatatagcattgctct 34519757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 51621017 - 51620979
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctct 52  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  51621017 tttcttaataaaatctttcttgatatatagcattgctct 51620979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 28622728 - 28622777
Alignment:
Q  179 cctatcatatgtttgatgggcacatgataacaaacaggatatcattataa 228  Q
    ||||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  28622728 cctatcatgcgtttgatgcacacatgataacaaacaggatatcattataa 28622777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 50004261 - 50004314
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcat 223  Q
    |||||| ||||||||||||||||| ||  |||||||||||||||| ||||||||    
T  50004261 aacatttatcctatcatatgtttggtgcacacatgataacaaacatgatatcat 50004314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 4952156 - 4952103
Alignment:
Q  170 aacattaatcctatcatatgtttgatgggcacatgataacaaacaggatatcat 223  Q
    |||||| ||||||||||||||||| ||  ||||| |||||||||| ||||||||    
T  4952156 aacatttatcctatcatatgtttggtgcacacataataacaaacatgatatcat 4952103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 52329356 - 52329319
Alignment:
Q  14 tttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  52329356 tttcttgataaattctttcttgatatataacattgctc 52329319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 9389275 - 9389303
Alignment:
Q  24 aaatctttcttgatatatagcattgctct 52  Q
    |||||||||||||||||||||||||||||    
T  9389275 aaatctttcttgatatatagcattgctct 9389303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 27523098 - 27523054
Alignment:
Q  3 attcttgaaattttcttgataaaatctttcttgatatatagcatt 47  Q
    |||||||||  ||||||||||||||| ||||||||||||| ||||    
T  27523098 attcttgaatctttcttgataaaatcattcttgatatataacatt 27523054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12892 - 12840
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12892 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 12840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41061 - 41009
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41061 tcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 41009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47900 - 47850
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 51  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47900 tcattcttgaaattttcttgataaaatctttcttgataaatagcattgctc 47850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4446 - 4394
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 53  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  4446 tcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctctt 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3118 - 3064
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttat 55  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  3118 tcattcttaaaattttattgataaaatctttcttgatatatagcattgctgttat 3064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8452 - 8413
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8452 tcattcttgaaattttcttgataaaatctttcttgatata 8413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16034 - 15995
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16034 tcattcttgaaattttcttgataaaatctttcttgatata 15995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25986 - 25947
Alignment:
Q  1 tcattcttgaaattttcttgataaaatctttcttgatata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25986 tcattcttgaaattttcttgataaaatctttcttgatata 25947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University