View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7144_low_6 (Length: 594)
Name: NF7144_low_6
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Complemental strand, 35518697 - 35518126
Alignment:
| Q |
19 |
tacaggtcagtagtcagtttgtgggaat----caacgtttgtttgttgtgggcaaccttgcttcatcacaatttcaaataaaaatgatttccaaatacta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35518697 |
tacaggtcagtagtcagtttgtgggaattaatcaacgtttgtttgttgtgggcaaccttgcttcatcacaatttcaaataaaaatgatttccaaatacta |
35518598 |
T |
|
| Q |
115 |
gtataggataaccatttcatctcaaaaattaagaaactttaaaaaatgagtgtgacattaatatttttgttttagatttaaaaagtgatttgatatattc |
214 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35518597 |
gta--ggataaccatttcatctcaaaaattaagaaactttaaaaaatgagtgtgacattaatatttttgttttagatttaaaaagtgatttgatatattc |
35518500 |
T |
|
| Q |
215 |
attatattattnnnnnnntatgaagtatacaaattaaaaatactttatatttatttgttcgttttaatttatgtaccctgaccctccctgaatacatttt |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35518499 |
attatattattaaaaaaatatgaagtatacaaattaaaaatactttatatttatttgttctttttaatttatgtaccctgaccctccctgaatacatttt |
35518400 |
T |
|
| Q |
315 |
aatgaagagaagcttgatctggaattaaatttctcacaccaacaacatccatcttccattaatatttaatagtccatcctataagaattcctgaagtaca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35518399 |
aatgaagagaagcttgatctggaattaaatttctcacaccaacaacatccatctttcattaatatttaatagtccatcctataagaattcctgaagtaca |
35518300 |
T |
|
| Q |
415 |
gtatttacctaccaataacatattttgcatgaacaaaggattacacgtggagcatatagatagtgtgacaaagattcaaagaaaagaggttggttgagag |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35518299 |
gtatttacctaccaataacatattttgcatgaacaaaggaatacacgtggagcatatagatagtgtgacaaagattcaaagaaaagaggttggttgagag |
35518200 |
T |
|
| Q |
515 |
tgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgt |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35518199 |
tgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgt |
35518126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 506 - 588
Target Start/End: Complemental strand, 35523806 - 35523724
Alignment:
| Q |
506 |
ggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgt |
588 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||| |
|
|
| T |
35523806 |
ggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttgatgatggtgccatttgatgatgt |
35523724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University