View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7144_low_7 (Length: 534)

Name: NF7144_low_7
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7144_low_7
NF7144_low_7
[»] chr2 (15 HSPs)
chr2 (87-327)||(5523609-5523852)
chr2 (351-517)||(5523370-5523537)
chr2 (18-85)||(34983277-34983349)
chr2 (18-87)||(6750091-6750165)
chr2 (18-90)||(22674825-22674902)
chr2 (18-86)||(12994975-12995039)
chr2 (18-87)||(38527173-38527247)
chr2 (54-88)||(1115164-1115198)
chr2 (16-54)||(41699221-41699259)
chr2 (54-87)||(1021196-1021229)
chr2 (54-87)||(2249580-2249613)
chr2 (54-87)||(28745620-28745653)
chr2 (54-87)||(32099928-32099961)
chr2 (54-87)||(36436308-36436341)
chr2 (87-115)||(19253652-19253680)
[»] chr8 (8 HSPs)
chr8 (18-87)||(24797139-24797213)
chr8 (18-87)||(21434842-21434913)
chr8 (18-87)||(9830607-9830681)
chr8 (18-87)||(41838040-41838114)
chr8 (18-88)||(7012336-7012411)
chr8 (54-87)||(34934382-34934415)
chr8 (54-86)||(1183823-1183855)
chr8 (87-115)||(31974740-31974768)
[»] chr5 (10 HSPs)
chr5 (18-91)||(16823126-16823204)
chr5 (18-87)||(41084666-41084738)
chr5 (20-87)||(25701507-25701579)
chr5 (18-80)||(29390275-29390342)
chr5 (18-87)||(3631258-3631332)
chr5 (18-87)||(13013339-13013413)
chr5 (18-87)||(9737791-9737865)
chr5 (18-87)||(26525314-26525388)
chr5 (18-87)||(8074323-8074398)
chr5 (59-87)||(16285341-16285369)
[»] chr3 (8 HSPs)
chr3 (18-87)||(36633486-36633560)
chr3 (18-89)||(29126129-29126205)
chr3 (22-87)||(28952481-28952551)
chr3 (18-87)||(52571510-52571584)
chr3 (18-87)||(18163717-18163791)
chr3 (20-87)||(13594961-13595033)
chr3 (18-80)||(21259520-21259587)
chr3 (54-87)||(50527760-50527793)
[»] chr1 (14 HSPs)
chr1 (18-87)||(29981791-29981865)
chr1 (18-87)||(6849752-6849826)
chr1 (18-87)||(16693033-16693107)
chr1 (18-87)||(17285378-17285452)
chr1 (18-87)||(29169941-29170015)
chr1 (18-87)||(51139692-51139759)
chr1 (20-80)||(919796-919861)
chr1 (18-88)||(8530081-8530156)
chr1 (18-88)||(45836853-45836917)
chr1 (18-88)||(9042502-9042577)
chr1 (54-87)||(9247025-9247058)
chr1 (54-87)||(24790434-24790467)
chr1 (87-115)||(5932227-5932255)
chr1 (87-115)||(31883725-31883753)
[»] chr7 (13 HSPs)
chr7 (20-87)||(36358397-36358469)
chr7 (18-87)||(43859090-43859164)
chr7 (20-87)||(23562734-23562806)
chr7 (16-87)||(44142763-44142837)
chr7 (18-80)||(16834362-16834429)
chr7 (18-88)||(26873701-26873776)
chr7 (20-80)||(44468108-44468173)
chr7 (18-87)||(44724148-44724222)
chr7 (54-87)||(36675613-36675646)
chr7 (87-115)||(442799-442827)
chr7 (55-87)||(9021434-9021466)
chr7 (87-115)||(12005346-12005374)
chr7 (20-87)||(30781010-30781082)
[»] chr4 (15 HSPs)
chr4 (18-89)||(44134491-44134567)
chr4 (18-87)||(6755828-6755902)
chr4 (18-88)||(44817634-44817709)
chr4 (18-87)||(11651051-11651125)
chr4 (18-87)||(18491186-18491260)
chr4 (18-87)||(36955095-36955169)
chr4 (18-87)||(43564417-43564491)
chr4 (21-89)||(51001473-51001546)
chr4 (18-87)||(40228515-40228590)
chr4 (54-87)||(19653770-19653803)
chr4 (54-87)||(27270353-27270386)
chr4 (54-87)||(36584423-36584456)
chr4 (18-86)||(44745675-44745748)
chr4 (16-83)||(133354-133426)
chr4 (18-54)||(45669997-45670033)
[»] chr6 (3 HSPs)
chr6 (18-87)||(9079140-9079214)
chr6 (18-87)||(24635555-24635629)
chr6 (54-88)||(12698492-12698526)
[»] scaffold0131 (1 HSPs)
scaffold0131 (54-88)||(11165-11199)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-87)||(64933-65007)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 87 - 327
Target Start/End: Complemental strand, 5523852 - 5523609
Alignment:
Q  87 gtccaaaaccaaaaaatctttaaattacagagggatctcgaaacnnnnnnnn--acaaggg-taaaccatatttcacctatataaaaggaggtaaaaacc 183  Q
    ||||||||||||||||||||||||||| ||||||||||||||||          ||| ||| |||||||||||||||||||||| |||| ||||||||||    
T  5523852 gtccaaaaccaaaaaatctttaaattatagagggatctcgaaacttttgtttttacagggggtaaaccatatttcacctatatagaagggggtaaaaacc 5523753  T
Q  184 tattaaccccataaaaaataagtgtactttaaaagtatccatcatcaatatttgctccatataaataagaatcgtaggaaaataaaattatgctatttga 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5523752 tattaaccccataaaaaataagtgtactttaaaagtatccatcatcaatatttgctccatataaataagaatcgtaggaaaataaaattatgctatttga 5523653  T
Q  284 ggggtaatctaggaatttcgtttataaaataaaggaaaagcaca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5523652 ggggtaatctaggaatttcgtttataaaataaaggaaaagcaca 5523609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 351 - 517
Target Start/End: Complemental strand, 5523537 - 5523370
Alignment:
Q  351 atcatcaaagatataagtgagtacttaaatttacgtgagaccataatatgcctaagaaaaa-taaaaacttaacttgatgtgcaacgtcatgatttcaat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  5523537 atcatcaaagatataagtgagtacttaaatttacgtgagaccataatatgcctaaaaaaaaataaaaacttaacttcatgtgcaacgtcatgatttcaat 5523438  T
Q  450 ttcaacatcaccatcaatttgtggttctaatccttagcttgattgatgacattgtgagaggaaaacct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5523437 ttcaacatcaccatcaatttgtggttctaatccttagcttgattgatgacattgtgagatgaaaacct 5523370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 34983349 - 34983277
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccac 85  Q
    |||||||||||||||||||||||||||||| | |||     ||||||||||||||||||||||||||| ||||    
T  34983349 acctataatcgttgatttttcaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccac 34983277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 6750091 - 6750165
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  6750091 acctataatcgttgatttttaaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 6750165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22674825 - 22674902
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggggc-----ccaccccagcccatgaagggctccaccactgtcc 90  Q
    |||||||||||||||||||| ||||||||| | |||| |     |||||||||||||||||||||||| |||||||||    
T  22674825 acctataatcgttgattttttaatttttccgggtgggccgtggtccaccccagcccatgaagggctccgccactgtcc 22674902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 12995039 - 12994975
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggggcccaccccagcccatgaagggctccaccact 86  Q
    |||||||||||||||||||| |||||||| |     ||||||||||||||||||||||||||| |||||    
T  12995039 acctataatcgttgattttttaatttttctac----ggcccaccccagcccatgaagggctccgccact 12994975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 38527247 - 38527173
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||  |||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  38527247 acctataatcgttgatttttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 38527173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 1115164 - 1115198
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactgt 88  Q
    ||||||||||||||||||||||||||| |||||||    
T  1115164 ggcccaccccagcccatgaagggctccgccactgt 1115198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 41699259 - 41699221
Alignment:
Q  16 atacctataatcgttgatttttcaatttttccagatggg 54  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  41699259 atacctataatcgttgattttttaatttttccggatggg 41699221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 1021196 - 1021229
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  1021196 ggcccaccccagcccatgaagggctccgccactg 1021229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 2249613 - 2249580
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  2249613 ggcccaccccagcccatgaagggctccgccactg 2249580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 28745620 - 28745653
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  28745620 ggcccaccccagcccatgaagggctccgccactg 28745653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 32099961 - 32099928
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||| ||||||||||||||||||||||||    
T  32099961 ggcccaccctagcccatgaagggctccaccactg 32099928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 36436308 - 36436341
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  36436308 ggcccaccccagcccatgaagggctccgccactg 36436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 19253652 - 19253680
Alignment:
Q  87 gtccaaaaccaaaaaatctttaaattaca 115  Q
    |||||||||||||||||||||||||||||    
T  19253652 gtccaaaaccaaaaaatctttaaattaca 19253680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 24797139 - 24797213
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| ||||||     |||||||||||||||||||||||||| ||||||    
T  24797139 acctataatcgttgatttttaaatttttccggatgggccgtggcccaccccagcccatgaagggctccgccactg 24797213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 21434913 - 21434842
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg--gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| ||||||  |||||| |||| ||||||| |||||| ||||||    
T  21434913 acctataatcgttgattttttaatttttccggatgggccgcccactccagtccatgaaaggctccgccactg 21434842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 9830681 - 9830607
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||| | | ||||     |||||||||||||||||||||||||| ||||||    
T  9830681 acctataatcgttgattttttaattttttcgggtgggccgtggcccaccccagcccatgaagggctccgccactg 9830607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 41838040 - 41838114
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| |  |||     |||||||||||||||||||||||||| ||||||    
T  41838040 acctataatcgttgattttttaatttttccgggcgggccgtggcccaccccagcccatgaagggctccgccactg 41838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 7012411 - 7012336
Alignment:
Q  18 acctataatcgttgatttttcaatttttcc-----agatggggcccaccccagcccatgaagggctccaccactgt 88  Q
    |||||||||| ||||||||| |||||||||     ||  | ||||||||||||||||||||||||||| |||||||    
T  7012411 acctataatcattgattttttaatttttccgagtgagccgtggcccaccccagcccatgaagggctccgccactgt 7012336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 34934382 - 34934415
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  34934382 ggcccaccccagcccatgaagggctccgccactg 34934415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 1183855 - 1183823
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccact 86  Q
    ||||||||||||||||||||||||||| |||||    
T  1183855 ggcccaccccagcccatgaagggctccgccact 1183823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 31974768 - 31974740
Alignment:
Q  87 gtccaaaaccaaaaaatctttaaattaca 115  Q
    |||||||||||||||||||||||||||||    
T  31974768 gtccaaaaccaaaaaatctttaaattaca 31974740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 16823204 - 16823126
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactgtcca 91  Q
    |||||||||||||||||||| ||||||||| ||||||     |||||||||||||||||||||||||| ||| ||||||    
T  16823204 acctataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggctccgccattgtcca 16823126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 41084666 - 41084738
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg---ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | |||   ||||||||||||||||||||||||||| ||||||    
T  41084666 acctataatcgttgattttttaatttttccgggtggaccggcccaccccagcccatgaagggctccgccactg 41084738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 25701507 - 25701579
Alignment:
Q  20 ctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||| ||||||||| ||||||     |||||||||||||||||||||||||| ||||||    
T  25701507 ctataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggctccgccactg 25701579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 29390342 - 29390275
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctcc 80  Q
    |||||||||||||||||||| ||||||||||| |||     |||||||||||||||||||||||||||    
T  29390342 acctataatcgttgattttttaatttttccaggtgggccgtggcccaccccagcccatgaagggctcc 29390275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 3631332 - 3631258
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  3631332 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 3631258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 13013339 - 13013413
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  13013339 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 13013413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 9737791 - 9737865
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||| |||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  9737791 acctataatcgttaattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 9737865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 26525314 - 26525388
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||  |||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  26525314 acctataatcgttgatttttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 26525388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 8074323 - 8074398
Alignment:
Q  18 acctataatcgttgatttttcaat-ttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||  |||||||| ||||     |||||||||||||||||||||||||| ||||||    
T  8074323 acctataatcgttgattttttaaaattttccaggtgggccgtggcccaccccagcccatgaagggctccgccactg 8074398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 16285341 - 16285369
Alignment:
Q  59 accccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||||||||||||    
T  16285341 accccagcccatgaagggctccaccactg 16285369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 36633560 - 36633486
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| ||||||     |||||||||||||||||||||||||| ||||||    
T  36633560 acctataatcgttgattttttaatttttccggatgggtcgtggcccaccccagcccatgaagggctccgccactg 36633486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 29126129 - 29126205
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactgtc 89  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||||    
T  29126129 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgtc 29126205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 28952481 - 28952551
Alignment:
Q  22 ataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||| ||||||||||| |||     ||||||||||||||||||||||||||| ||||||    
T  28952481 ataatcgttgattttttaatttttccaggtggatcgtggcccaccccagcccatgaagggctccgccactg 28952551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 52571510 - 52571584
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  52571510 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 52571584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 18163791 - 18163717
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||  |||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  18163791 acctataatcgttgatttttttatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 18163717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 13594961 - 13595033
Alignment:
Q  20 ctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||| ||||||| ||| ||||     |||||||||||||||||| ||||||| ||||||    
T  13594961 ctataatcgttgattttttaattttttcaggtgggccgtggcccaccccagcccatgacgggctccgccactg 13595033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 21259520 - 21259587
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctcc 80  Q
    |||||||||||||||||||| ||||||||| |||||     ||||||| ||| |||||||||||||||    
T  21259520 acctataatcgttgatttttaaatttttccggatgggtcgtggcccactccaacccatgaagggctcc 21259587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 50527760 - 50527793
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  50527760 ggcccaccccagcccatgaagggctccgccactg 50527793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 29981791 - 29981865
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| ||||||     |||||||||||||||||||||||||| ||||||    
T  29981791 acctataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggctccgccactg 29981865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 6849826 - 6849752
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  6849826 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 6849752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 16693033 - 16693107
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  16693033 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 16693107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 17285378 - 17285452
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  17285378 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 17285452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 29170015 - 29169941
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  29170015 acctataatcgttgattttttaatttttccgggtgggctgtggcccaccccagcccatgaagggctccgccactg 29169941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 51139759 - 51139692
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| |||||||   | ||||  |||||||||||||||||||||||||||||||    
T  51139759 acctataatcgttgattttttaattttttggggtggg--ccaccccagcccatgaagggctccaccactg 51139692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 919796 - 919861
Alignment:
Q  20 ctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctcc 80  Q
    |||||||||||||||||| ||||||||| |||||     |||||||||||||||||||||||||||    
T  919796 ctataatcgttgatttttaaatttttccggatgggccgtggcccaccccagcccatgaagggctcc 919861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 8530156 - 8530081
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactgt 88  Q
    |||||||||||||||||||| ||||||| | | ||||     |||||||||||||||||||||||||| |||||||    
T  8530156 acctataatcgttgattttttaattttttcgggtgggccgtggcccaccccagcccatgaagggctccgccactgt 8530081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 45836917 - 45836853
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggggcccaccccagcccatgaagggctccaccactgt 88  Q
    |||||||||||||||||||| ||||||| |      ||||||||||||||||||||||||||| |||||||    
T  45836917 acctataatcgttgattttttaatttttac------ggcccaccccagcccatgaagggctccgccactgt 45836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 9042502 - 9042577
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactgt 88  Q
    |||||||||  ||||||||| ||||||||| ||||||     ||||| |||||||||||||||||||| |||||||    
T  9042502 acctataattattgattttttaatttttccggatgggccgtggcccagcccagcccatgaagggctccgccactgt 9042577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 9247025 - 9247058
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||| |||||||||||||||||||||||||    
T  9247025 ggcccacctcagcccatgaagggctccaccactg 9247058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 24790467 - 24790434
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||| ||||||||||||||||||||||||||    
T  24790467 ggcccactccagcccatgaagggctccaccactg 24790434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 5932227 - 5932255
Alignment:
Q  87 gtccaaaaccaaaaaatctttaaattaca 115  Q
    |||||||||||||||||||||||||||||    
T  5932227 gtccaaaaccaaaaaatctttaaattaca 5932255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 31883725 - 31883753
Alignment:
Q  87 gtccaaaaccaaaaaatctttaaattaca 115  Q
    |||||||||||||||||||||||||||||    
T  31883725 gtccaaaaccaaaaaatctttaaattaca 31883753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 36358397 - 36358469
Alignment:
Q  20 ctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||| ||||||||||| |||     ||||||||||||||||||||||||||| ||||||    
T  36358397 ctataatcgttgattttttaatttttccaggtggaccgtggcccaccccagcccatgaagggctccgccactg 36358469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 43859164 - 43859090
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||||| |||     ||||||||| ||||||||||||||||| ||||||    
T  43859164 acctataatcgttgattttttaatttttccaggtgggccgtggcccaccctagcccatgaagggctccgccactg 43859090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 23562734 - 23562806
Alignment:
Q  20 ctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||| ||||||||||| |||     ||||||||||||| ||||||||||||| ||||||    
T  23562734 ctataatcgttgattttttaatttttccaggtgggccatggcccaccccagctcatgaagggctccgccactg 23562806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 44142837 - 44142763
Alignment:
Q  16 atacctataatcgttgatttttcaatttttccagatgg---ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||||| ||||||||  |||||   ||||||||| ||||||||||||||| | ||||||    
T  44142837 atacctataatcgttgattttttaatttttctggatgggccggcccacccgagcccatgaagggcttcgccactg 44142763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 16834362 - 16834429
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctcc 80  Q
    ||||||||||||||||||||  |||||||| ||||||     ||||||||||||||||||||||||||    
T  16834362 acctataatcgttgatttttttatttttccggatgggccatggcccaccccagcccatgaagggctcc 16834429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 26873776 - 26873701
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactgt 88  Q
    |||||||||| ||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| |||||||    
T  26873776 acctataatcattgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgt 26873701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 44468108 - 44468173
Alignment:
Q  20 ctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctcc 80  Q
    |||||||||||||||||| ||||||||||| |||     |||||||||||||| ||||||||||||    
T  44468108 ctataatcgttgattttttaatttttccaggtgggccgtggcccaccccagcctatgaagggctcc 44468173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 44724148 - 44724222
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||| |||| ||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  44724148 acctataatagttggttttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 44724222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 36675613 - 36675646
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  36675613 ggcccaccccagcccatgaagggctccgccactg 36675646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 442799 - 442827
Alignment:
Q  87 gtccaaaaccaaaaaatctttaaattaca 115  Q
    |||||||||||||||||||||||||||||    
T  442799 gtccaaaaccaaaaaatctttaaattaca 442827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 9021466 - 9021434
Alignment:
Q  55 gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||| ||||||||||||||||||||||||    
T  9021466 gcccaccctagcccatgaagggctccaccactg 9021434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 12005374 - 12005346
Alignment:
Q  87 gtccaaaaccaaaaaatctttaaattaca 115  Q
    |||||||||||||||||||||||||||||    
T  12005374 gtccaaaaccaaaaaatctttaaattaca 12005346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 30781082 - 30781010
Alignment:
Q  20 ctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||| |||||| |||||| ||||||| ||||||||     |||||||| | ||||||||||||||||||||||    
T  30781082 ctatgatcgttaattttttaattttttcagatgggtcgtggcccaccctaacccatgaagggctccaccactg 30781010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 44134567 - 44134491
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactgtc 89  Q
    |||||||||||||||||||| ||||||||| | |||     ||||||||||||||||||||||||||| ||||||||    
T  44134567 acctataatcgttgattttttaatttttccgggtggaccgtggcccaccccagcccatgaagggctccgccactgtc 44134491  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 6755902 - 6755828
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  6755902 acctataatcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 6755828  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 44817634 - 44817709
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactgt 88  Q
    ||||||| |||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| |||||||    
T  44817634 acctatagtcgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgt 44817709  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11651051 - 11651125
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| |  |||     |||||||||||||||||||||||||| ||||||    
T  11651051 acctataatcgttgattttttaatttttccgggcgggccgtggcccaccccagcccatgaagggctccgccactg 11651125  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 18491260 - 18491186
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| |||||||||   ||||     |||||||||||||||||||||||||| ||||||    
T  18491260 acctataatcgttgattttttaatttttccgagtgggccgtggcccaccccagcccatgaagggctccgccactg 18491186  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 36955095 - 36955169
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| |||||||   ||||||     |||||||||||||||||||||||||| ||||||    
T  36955095 acctataatcgttgattttttaattttttgggatgggtcacggcccaccccagcccatgaagggctccgccactg 36955169  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 43564491 - 43564417
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| |||||     |||||||||||||| |||||| ||||| ||||||    
T  43564491 acctataatcgttgattttttaatttttccggatggactgtggcccaccccagccaatgaagagctccgccactg 43564417  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 51001546 - 51001473
Alignment:
Q  21 tataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactgtc 89  Q
    ||||| ||||||||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||||    
T  51001546 tataaacgttgattttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactgtc 51001473  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 40228515 - 40228590
Alignment:
Q  18 acctataatcgttgatttttcaa-tttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| || ||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  40228515 acctataatcgttgattttttaaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 40228590  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 19653770 - 19653803
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  19653770 ggcccaccccagcccatgaagggctccgccactg 19653803  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 27270386 - 27270353
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  27270386 ggcccaccccagcccatgaagggctccgccactg 27270353  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 36584456 - 36584423
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  36584456 ggcccaccccagcccatgaagggctccgccactg 36584423  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 44745675 - 44745748
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccact 86  Q
    |||||||||||||||||||| ||||||||  |||||     ||||||||||||||||| || |||||| |||||    
T  44745675 acctataatcgttgattttttaatttttctggatgggccgtggcccaccccagcccattaaaggctccgccact 44745748  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 133426 - 133354
Alignment:
Q  16 atacctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccacc 83  Q
    ||||||||||||| | |||||| ||||||||||| ||||     |||||||||| ||||||||||| ||||||    
T  133426 atacctataatcgctaattttttaatttttccaggtgggatgtggcccaccccatcccatgaagggatccacc 133354  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 45670033 - 45669997
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg 54  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  45670033 acctataatcgttgattttttaatttttccggatggg 45669997  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 9079140 - 9079214
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| |||||     |||||||||||| |||||||||||||| ||||||    
T  9079140 acctataatcgttgattttttaatttttccggatgggctgtggcccaccccagtccatgaagggctccgccactg 9079214  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 24635555 - 24635629
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatgg-----ggcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||||||||||||||| ||||||||| |||||     ||||||||||||||||||||||||| | ||||||    
T  24635555 acctataatcgttgattttttaatttttccggatgggccgtggcccaccccagcccatgaagggcttcgccactg 24635629  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 12698526 - 12698492
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactgt 88  Q
    ||||||||||||||||||||||||||| |||||||    
T  12698526 ggcccaccccagcccatgaagggctccgccactgt 12698492  T

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Target: scaffold0131 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 11199 - 11165
Alignment:
Q  54 ggcccaccccagcccatgaagggctccaccactgt 88  Q
    ||||||||||||||||||||||||||| |||||||    
T  11199 ggcccaccccagcccatgaagggctccgccactgt 11165  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 65007 - 64933
Alignment:
Q  18 acctataatcgttgatttttcaatttttccagatggg-----gcccaccccagcccatgaagggctccaccactg 87  Q
    |||||||| ||||| ||||| ||||||||| | ||||     |||||||||||||||||||||||||| ||||||    
T  65007 acctataagcgttgtttttttaatttttccgggtgggccgtggcccaccccagcccatgaagggctccgccactg 64933  T

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