View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7144_low_8 (Length: 496)

Name: NF7144_low_8
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7144_low_8
NF7144_low_8
[»] chr5 (8 HSPs)
chr5 (13-430)||(38088984-38089399)
chr5 (317-434)||(43146349-43146465)
chr5 (317-438)||(2134750-2134871)
chr5 (295-438)||(20256894-20257033)
chr5 (317-436)||(29668518-29668635)
chr5 (457-496)||(38088274-38088313)
chr5 (390-438)||(24147135-24147183)
chr5 (317-377)||(32433649-32433709)
[»] chr8 (9 HSPs)
chr8 (318-438)||(9305231-9305350)
chr8 (317-438)||(29525866-29525988)
chr8 (317-438)||(35163002-35163123)
chr8 (296-434)||(30233805-30233938)
chr8 (320-377)||(36675658-36675715)
chr8 (317-438)||(41774940-41775062)
chr8 (355-438)||(27768891-27768974)
chr8 (391-438)||(36676334-36676381)
chr8 (317-360)||(36676482-36676525)
[»] chr3 (7 HSPs)
chr3 (317-438)||(35637217-35637338)
chr3 (317-438)||(2663239-2663359)
chr3 (318-438)||(49323176-49323295)
chr3 (320-438)||(3984450-3984567)
chr3 (324-380)||(46411187-46411243)
chr3 (317-359)||(28212615-28212657)
chr3 (317-377)||(54514592-54514652)
[»] chr2 (5 HSPs)
chr2 (317-438)||(18058785-18058906)
chr2 (316-429)||(39822903-39823016)
chr2 (317-377)||(25628886-25628946)
chr2 (317-438)||(5737209-5737329)
chr2 (320-377)||(13466893-13466950)
[»] chr1 (7 HSPs)
chr1 (298-438)||(43824194-43824331)
chr1 (317-436)||(19563370-19563487)
chr1 (317-438)||(36384318-36384437)
chr1 (320-423)||(47459129-47459230)
chr1 (317-436)||(41677745-41677864)
chr1 (317-369)||(18283317-18283369)
chr1 (298-365)||(37028555-37028618)
[»] chr7 (3 HSPs)
chr7 (317-436)||(24879081-24879200)
chr7 (327-436)||(48065001-48065110)
chr7 (317-366)||(37025600-37025649)
[»] chr4 (3 HSPs)
chr4 (325-438)||(50470025-50470138)
chr4 (317-436)||(31799277-31799396)
chr4 (390-426)||(42171243-42171279)
[»] chr6 (1 HSPs)
chr6 (317-369)||(21508453-21508505)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 38089399 - 38088984
Alignment:
Q  13 aaaatatgcccccatgacatctactaatacagacataacaaagaaatgtgaggaaaaccatctcgagcaaccactagacaaaattaaggatgtcaatttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38089399 aaaatatgcccccatgacatctactaatacagacataacaaagaaatgtgaggcaaaccctctcgagcaaccactagacaaaattaaggatgtcaatttg 38089300  T
Q  113 ttcttgcaagtgaaagtccatttgagaaatatcctacttgaagcctcgcgagaagaaagtttttctattggagatgcggattagggagaaagtttt-ccg 211  Q
    | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||  |||||||||| || |||||||||||||| |||    
T  38089299 tacttgcaagtgaaagtccatttgagaaatatcccacttgaagccttgcgagaagagagtttttcttgtggagatgcgtatgagggagaaagttttcccg 38089200  T
Q  212 taggtgtttttgaggtggagattgggatcatactcgtcaacc--cgtgcgacctatctctaagtttattaaaataatatcatatgttgagatattcttgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  38089199 taggtgtttttgaggtggagattgggatcatactcgtcaacccgcgtgcgacctgtccctaagtttattaaaataatattatatgttgagatattcttgc 38089100  T
Q  310 atcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaa 409  Q
    ||    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  38089099 at----caactctcatccaacacattattcttacacccaaccaataaaaatatgacacatgttattaattt-aaaaaaaatgtgattttaattaaggaaa 38089005  T
Q  410 tgaaaacataaatggtggtgg 430  Q
    |||||||||||||||||||||    
T  38089004 tgaaaacataaatggtggtgg 38088984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 317 - 434
Target Start/End: Complemental strand, 43146465 - 43146349
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||| ||||    
T  43146465 aactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactt-taaaaaagtgtgattttaattaaggaaatggaaac 43146367  T
Q  417 ataaatggtggtgggtgg 434  Q
     |||||||||||||||||    
T  43146366 gtaaatggtggtgggtgg 43146349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 2134871 - 2134750
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    |||||||| ||||||||| ||| ||||||  |||||||||||| |||||||||||| |||| ||         |||||||||||| ||||||||||||||    
T  2134871 aactctcagccaacacatcattgttacaccaaaccaataaaaaaatgacacatgttcttaactttaaaaaaagtgtgattttaatcaaggaaatgaaaac 2134772  T
Q  417 ataaatggtggtgggtggttct 438  Q
    ||||||||||||||||||||||    
T  2134771 ataaatggtggtgggtggttct 2134750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 438
Target Start/End: Original strand, 20256894 - 20257033
Alignment:
Q  295 ttgagatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa-tttnnnnnnnnntgtg 393  Q
    |||||||||||||||||     |||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||         ||||    
T  20256894 ttgagatattcttgcat----aaactctcatccaacacatttttcttacacccaa-caataaaaatatgacacatgttattaactttaaaaaaaagtgtg 20256988  T
Q  394 attttaattaaggaaatgaaaacataaatggtggtgggtggttct 438  Q
    ||||||  |||||||||| ||||||||||||||||||||||||||    
T  20256989 attttagctaaggaaatggaaacataaatggtggtgggtggttct 20257033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 436
Target Start/End: Complemental strand, 29668635 - 29668518
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||| ||         |||||||||||||||||||||| ||||    
T  29668635 aactctcacc-aacacattattcttacatccaaccaataaaaatatgacacatgttgttaactttaaaaaaagtgtgattttaattaaggaaatggaaac 29668537  T
Q  417 ataaatggtggtgggtggtt 436  Q
    |||||| |||| ||||||||    
T  29668536 ataaatagtgg-gggtggtt 29668518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 496
Target Start/End: Complemental strand, 38088313 - 38088274
Alignment:
Q  457 taccaatcattttattaacatcatcatccaaaagaaagaa 496  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38088313 taccaatcattttattaacatcatcatccaaaagaaagaa 38088274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 24147135 - 24147183
Alignment:
Q  390 tgtgattttaattaaggaaatgaaaacataaatggtggtgggtggttct 438  Q
    |||||||||||||||| ||||| |||||||||||||| | |||||||||    
T  24147135 tgtgattttaattaagtaaatggaaacataaatggtgatcggtggttct 24147183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 32433649 - 32433709
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 377  Q
    |||||| ||||||||||| ||||||||||  | | ||| || |||||||||||||||||||    
T  32433649 aactctaacccaacacatcattcttacacctatctaattaacatatgacacatgttattaa 32433709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 318 - 438
Target Start/End: Complemental strand, 9305350 - 9305231
Alignment:
Q  318 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaaca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||| ||||||    
T  9305350 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaactt-taaaaaagtgtgattttaattaaggaaataaaaaca 9305252  T
Q  418 taaatggtggtgggtggttct 438  Q
    |||||||||||||||||||||    
T  9305251 taaatggtggtgggtggttct 9305231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 29525988 - 29525866
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa-tttnnnnnnnnntgtgattttaattaaggaaatgaaaa 415  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||| |||    
T  29525988 aactctcaccaaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaagagtgtgattttaattaaggaaatggaaa 29525889  T
Q  416 cataaatggtggtgggtggttct 438  Q
    |||||||||||||| ||||||||    
T  29525888 cataaatggtggtgtgtggttct 29525866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 35163002 - 35163123
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    |||||||  |||||||||||||||||||| | ||||||||||||||||||||||||||||| ||         |||||||||||||||||||||| ||||    
T  35163002 aactctcttccaacacattattcttacacccgaccaataaaaatatgacacatgttattaactttaaaaaaagtgtgattttaattaaggaaatggaaac 35163101  T
Q  417 ataaatggtggtgggtggttct 438  Q
    |||||||||||||||| |||||    
T  35163102 ataaatggtggtgggtagttct 35163123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 296 - 434
Target Start/End: Complemental strand, 30233938 - 30233805
Alignment:
Q  296 tgagatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgat 395  Q
    ||||||||||||||||     |||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||         ||||||    
T  30233938 tgagatattcttgcat----gaactctcacctaacacatcattcttacacccaaccaataaaaa-atgacacatgttattaactttaaaaaaagtgtgat 30233844  T
Q  396 tttaattaaggaaatgaaaacataaatggtggtgggtgg 434  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  30233843 tttaattaatgaaatgaaaacataaatggtggtgggtgg 30233805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 36675658 - 36675715
Alignment:
Q  320 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 377  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  36675658 tctcacccaatacattattcttacacccaaccaataaaaatatgacacatattattaa 36675715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 41775062 - 41774940
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaata-tgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaa 415  Q
    |||||||||||||||||| ||| |||||  |||| |||||||| | |||||||||||||| | ||         ||| |||||||||||||||||| |||    
T  41775062 aactctcacccaacacatcatttttacatccaacaaataaaaaaaatgacacatgttatttactttaaaaaaagtgttattttaattaaggaaatggaaa 41774963  T
Q  416 cataaatggtggtgggtggttct 438  Q
    ||||||||||||||| |||||||    
T  41774962 cataaatggtggtggatggttct 41774940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 438
Target Start/End: Complemental strand, 27768974 - 27768891
Alignment:
Q  355 aaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacataaatggtggtgggtggttct 438  Q
    ||||||||||||||||||||||| ||         | |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27768974 aaaaatatgacacatgttattaacttaaaaaaaaatatgattttaattaaggaaatggaaatataaatggtggtgggtggttct 27768891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 36676334 - 36676381
Alignment:
Q  391 gtgattttaattaaggaaatgaaaacataaatggtggtgggtggttct 438  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  36676334 gtgattttaattaaggaaatggaaacataaatggtgatgggtggttct 36676381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 36676525 - 36676482
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaat 360  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||    
T  36676525 aactcttacccaacacattattcttacattcaaccaattaaaat 36676482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 35637338 - 35637217
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||         ||||||||||||| |||||||| ||||    
T  35637338 aactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaaagtgtgattttaatttaggaaatggaaac 35637239  T
Q  417 ataaatggtggtgggtggttct 438  Q
    |||||| |||||||||||||||    
T  35637238 ataaatagtggtgggtggttct 35637217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 2663239 - 2663359
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    ||||||||| |||||||| ||||||||||  |||||||||||| |||||| |||||||||| ||         |||||||||||||||||||||| ||||    
T  2663239 aactctcactcaacacatcattcttacaccaaaccaataaaaa-atgacatatgttattaactttaaaaaaagtgtgattttaattaaggaaatggaaac 2663337  T
Q  417 ataaatggtggtgggtggttct 438  Q
    ||||||||||||||||||||||    
T  2663338 ataaatggtggtgggtggttct 2663359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 438
Target Start/End: Complemental strand, 49323295 - 49323176
Alignment:
Q  318 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaaca 417  Q
    |||||||| |||||||| ||||||||||  |||||||||||| |||||||||||| |||| ||         |||||||||||||||||||||| |||||    
T  49323295 actctcactcaacacatcattcttacacctaaccaataaaaagatgacacatgttgttaactttaaaaaag-tgtgattttaattaaggaaatggaaaca 49323197  T
Q  418 taaatggtggtgggtggttct 438  Q
    |||||||||||||||||||||    
T  49323196 taaatggtggtgggtggttct 49323176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 438
Target Start/End: Original strand, 3984450 - 3984567
Alignment:
Q  320 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacata 419  Q
    ||||||| || |||| ||||||| |||| ||||||||||| ||||||||||||||||| ||         ||||||||||| |||||||||  |||||||    
T  3984450 tctcaccaaagacatcattcttaaactcgaccaataaaaaaatgacacatgttattaactttaaaaaag-tgtgattttaactaaggaaatagaaacata 3984548  T
Q  420 aatggtggtgggtggttct 438  Q
    |||||||||||||||||||    
T  3984549 aatggtggtgggtggttct 3984567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 46411243 - 46411187
Alignment:
Q  324 acccaacacattattcttacactcaaccaataaaaatatgacacatgttattaattt 380  Q
    |||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||    
T  46411243 acccaacacattattcttacacccgaccaatagagatatgacacatgttattaattt 46411187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 28212615 - 28212657
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaa 359  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  28212615 aactctcatccaacacatcattcttacacccaaccaataaaaa 28212657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 54514652 - 54514592
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 377  Q
    ||||||||||||||| || ||| ||||| | ||||||||||||||| |||| | |||||||    
T  54514652 aactctcacccaacaaataattgttacatttaaccaataaaaatataacacctattattaa 54514592  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 18058785 - 18058906
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||         |||||||||||||||||||||| ||||    
T  18058785 aactctcacccaacacattattcttacacttgactaataaaaatatgacacatgttattaactttaaataaagtgtgattttaattaaggaaatggaaac 18058884  T
Q  417 ataaatggtggtgggtggttct 438  Q
    ||||||||||||||||||||||    
T  18058885 ataaatggtggtgggtggttct 18058906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 316 - 429
Target Start/End: Complemental strand, 39823016 - 39822903
Alignment:
Q  316 caactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaa 415  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||         |||||||||||||||| ||||| |||    
T  39823016 caactctcacccaacacatcattcttacacccaaccaataaaaatatgacacatgttattaaatttaaaaaaagtgtgattttaattaagaaaatggaaa 39822917  T
Q  416 cataaatggtggtg 429  Q
    ||||||||||||||    
T  39822916 cataaatggtggtg 39822903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 25628886 - 25628946
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 377  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||    
T  25628886 aactctcacccaacacattatttttacacccaaccaataaaaatatgatacatattattaa 25628946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 5737209 - 5737329
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    |||||||| ||||||||| |||||||||| |||| ||||||||  |||||  ||||||||| ||          |||||||| |||||||||||| ||||    
T  5737209 aactctcatccaacacatcattcttacacccaacaaataaaaaattgacatctgttattaactttaaaaaaga-gtgattttcattaaggaaatggaaac 5737307  T
Q  417 ataaatggtggtgggtggttct 438  Q
     |||||||||||||||||||||    
T  5737308 gtaaatggtggtgggtggttct 5737329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 13466950 - 13466893
Alignment:
Q  320 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 377  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||| || |||||||    
T  13466950 tctcatccaacacataattcttacactaaaccaataaaaatatgacatatattattaa 13466893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 298 - 438
Target Start/End: Original strand, 43824194 - 43824331
Alignment:
Q  298 agatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntg-tgatt 396  Q
    ||||||||||||||||||    |||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||         || |||||    
T  43824194 agatattcttgcatcaac----tctcactcaacacatcattcttacacccaaccaataaaaaaatgacacatgttattaactttaaaaaaaatgttgatt 43824289  T
Q  397 ttaattaaggaaatgaaaacataaatggtggtgggtggttct 438  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43824290 ttaattaaggaaatgaaaacataaatggtggtgggtggttct 43824331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 317 - 436
Target Start/End: Original strand, 19563370 - 19563487
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||| ||          ||||||||||||||||||||||||||    
T  19563370 aactctcacccaagacatcattcttacacccaaccaataaaaatatgacacatattattaacttttaaaaaa--gtgattttaattaaggaaatgaaaac 19563467  T
Q  417 ataaatggtggtgggtggtt 436  Q
    ||||||||||||||||||||    
T  19563468 ataaatggtggtgggtggtt 19563487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 36384437 - 36384318
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    |||||||||||||||||| |||||||||| ||||||||||||| || ||| |||||||||| ||         |||||||||||||||||||||| ||||    
T  36384437 aactctcacccaacacatcattcttacacccaaccaataaaaa-ataacatatgttattaactttaaaaaag-tgtgattttaattaaggaaatggaaac 36384340  T
Q  417 ataaatggtggtgggtggttct 438  Q
    ||||||| ||||||||||||||    
T  36384339 ataaatgatggtgggtggttct 36384318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 423
Target Start/End: Complemental strand, 47459230 - 47459129
Alignment:
Q  320 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacata 419  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||| ||          ||||||||||||||||||||| |||||||    
T  47459230 tctcacctaacacattattcttacatccaaccaataaaaaaatgacacatgttattaactttaaaaaaa--gtgattttaattaaggaaatggaaacata 47459133  T
Q  420 aatg 423  Q
    ||||    
T  47459132 aatg 47459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 436
Target Start/End: Original strand, 41677745 - 41677864
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataa-aaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaa 415  Q
    ||||||||| ||| |||| |||||||||| || ||||||| ||| |||| |||||||||||| ||         | |||||||||||||||||||| |||    
T  41677745 aactctcactcaatacatcattcttacaccca-ccaataagaaaaatgatacatgttattaactttaaaaaatatatgattttaattaaggaaatggaaa 41677843  T
Q  416 cataaatggtggtgggtggtt 436  Q
    |||||||||||||||||||||    
T  41677844 cataaatggtggtgggtggtt 41677864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 18283317 - 18283369
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacat 369  Q
    |||||||||||||||||| ||| ||||||||  ||||| ||||||||||||||    
T  18283317 aactctcacccaacacatcatttttacactctgccaatgaaaatatgacacat 18283369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 37028555 - 37028618
Alignment:
Q  298 agatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgac 365  Q
    ||||||||||||||||||    ||||||| || |||| |||||||||| ||||||||||||| |||||    
T  37028555 agatattcttgcatcaac----tctcaccgaatacatcattcttacacccaaccaataaaaaaatgac 37028618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 317 - 436
Target Start/End: Complemental strand, 24879200 - 24879081
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||| ||         |||||||||||||||||||||| ||||    
T  24879200 aactctcacccaacacattattcttacacccgatcaataaaaatatgacatatgttattaactttaaaaaaaatgtgattttaattaaggaaatggaaac 24879101  T
Q  417 ataaatggtggtgggtggtt 436  Q
    ||||||||||||||||||||    
T  24879100 ataaatggtggtgggtggtt 24879081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 436
Target Start/End: Complemental strand, 48065110 - 48065001
Alignment:
Q  327 caacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacataaatggtg 426  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||         | |||||||| || |||||||| ||||||||| ||||    
T  48065110 caacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaaagtttgattttacttgaggaaatggaaacataaacggtg 48065011  T
Q  427 gtgggtggtt 436  Q
    ||||||||||    
T  48065010 gtgggtggtt 48065001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 37025649 - 37025600
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgaca 366  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| ||||    
T  37025649 aactctcacccaacacatcattcttacactcatccaatcaaaataagaca 37025600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 50470025 - 50470138
Alignment:
Q  325 cccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacataaatgg 424  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||         ||| |||||| ||||||||||| ||||||||||||    
T  50470025 cccaacacattattcttacatccaaccaataaaaatatgacacatgttattaactttaaaaaaagtgtaattttatttaaggaaatggaaacataaatgg 50470124  T
Q  425 tggtgggtggttct 438  Q
    ||||||||||||||    
T  50470125 tggtgggtggttct 50470138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 317 - 436
Target Start/End: Complemental strand, 31799396 - 31799277
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 416  Q
    |||||||||| ||||||| ||||||| |||||| ||||||||| ||||||||||||||||| ||         ||||||||||||||| |||||||||||    
T  31799396 aactctcaccaaacacatcattcttatactcaatcaataaaaaaatgacacatgttattaactttaaaaaaagtgtgattttaattaaagaaatgaaaac 31799297  T
Q  417 ataaatggtggtgggtggtt 436  Q
    |||||||||||| |||||||    
T  31799296 ataaatggtggtaggtggtt 31799277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 426
Target Start/End: Complemental strand, 42171279 - 42171243
Alignment:
Q  390 tgtgattttaattaaggaaatgaaaacataaatggtg 426  Q
    |||||||||||||||| |||||||||||| |||||||    
T  42171279 tgtgattttaattaagaaaatgaaaacatgaatggtg 42171243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 21508453 - 21508505
Alignment:
Q  317 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacat 369  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  21508453 aactcttacccaacatattattcttacacgcaaccaataaaaatatgacacat 21508505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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