View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7144_low_9 (Length: 488)
Name: NF7144_low_9
Description: NF7144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7144_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 2 - 472
Target Start/End: Complemental strand, 44879343 - 44878873
Alignment:
| Q |
2 |
tttggaagtgtgtataaatgaagcctcggagatggtactctaattgcagtgaagaaacttgacaagatattgcctcatggagagaaagagtttataactg |
101 |
Q |
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| T |
44879343 |
tttggaagtgtgtataaaggaagcctcggagatggtactctaattgcagtgaagaaacttgacaagatattgcctcatggagagaaagagtttataactg |
44879244 |
T |
|
| Q |
102 |
aagtaaacacaattggctcaatgcatcatatgaatttggttcgtctatgcgttttttgttctgaggaaccacacaggtgtactatatttacaattttatc |
201 |
Q |
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| T |
44879243 |
aagtaaacacaattggctcaatgcatcatatgaatttggttcgtctatgcggtttttgttctgagggaccacacaggtgtactatatttacaattttatc |
44879144 |
T |
|
| Q |
202 |
attctttacccgatcaagcgaatattgtttgaattggatttaactcattcataagacttaaaatctcaatggtttaattggcttgagtaatatttgtttg |
301 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879143 |
attctttacccgatccagcgaatattgttttaattggatttaagtcattcataagacttaaaatctcaatggtttaattggcttgagtaatatttgtttg |
44879044 |
T |
|
| Q |
302 |
gcaggcttctagtgtacgagttcatgaagaatggttcattggataaatggatcttcccttcatatcgagggcgagatagattgctagattggcaaactcg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879043 |
gcaggcttctagtgtacgagttcatgaagaatggttcattggataaatggatcttcccttcatatcgagggcgagatagattgctagattggcaaactcg |
44878944 |
T |
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| Q |
402 |
tttcgatatagccataaatactgcacaggggattgcatactttcatgagcaatgcagaaataggataatac |
472 |
Q |
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| T |
44878943 |
tttcgatatagccataaatactgcacaggggattgcatactttcatgagcaatgcagaaataggataatac |
44878873 |
T |
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