View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_high_10 (Length: 287)
Name: NF7145_high_10
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_high_10 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: scaffold0102 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 34769 - 34509
Alignment:
| Q |
19 |
actagacacctagcagccagttgtagattcacagcagtcgccttggcttgaccaattcccaattgattgataattgatttaggcatcaaattgatgcttt |
118 |
Q |
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| T |
34769 |
actagacacctagcagccagttgtaaattcacagcagtaggcttggcttgaccaattcccaattgattgataattgatttaggcatcaaattgatgcttg |
34670 |
T |
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| Q |
119 |
cccctaaatcacaaagtgcctccccacaataaactccacctatagaacatggaatagtgaagctaaatgggtccttcatctttcctggtatcttgtgttg |
218 |
Q |
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| T |
34669 |
cccctaaatcacaaagtgcctccccacaataaactccacctatagaacatggaatagtgaagctacatgggtccttcatctttcctggtatcttgtgttg |
34570 |
T |
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| Q |
219 |
gatcaacatgctgctttcagctgtcattgctaacgtcttaaagtctcccaaccttcttctc |
279 |
Q |
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| T |
34569 |
gatcaacatgctgctttcagctgtcattgctaatgtcttaaagtcgcccaaccttcttctc |
34509 |
T |
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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 13840830 - 13840684
Alignment:
| Q |
37 |
agttgtagattcacagcagtcgccttggcttgaccaattcccaattgattgataattgatttaggcatcaaattgatgctttcccctaaatcacaaagtg |
136 |
Q |
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|||| ||||||| ||||| | | ||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||| | || ||||||||||| | |
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| T |
13840830 |
agttttagattcgcagcactaggcttggcttgaccaattcccaattgattgaaaatttatttaggcattagattgatgcttgctccaaaatcacaaagcg |
13840731 |
T |
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| Q |
137 |
cctccccacaataaactccacctatagaacatggaatagtgaagcta |
183 |
Q |
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| T |
13840730 |
ccttcccacaataaacttcatctataaaataaggaatggtgaagcta |
13840684 |
T |
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