View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_high_11 (Length: 274)

Name: NF7145_high_11
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_high_11
NF7145_high_11
[»] chr3 (13 HSPs)
chr3 (22-267)||(2806931-2807176)
chr3 (22-255)||(2790040-2790273)
chr3 (21-243)||(5412601-5412814)
chr3 (22-255)||(2748680-2748904)
chr3 (22-243)||(2797055-2797267)
chr3 (18-243)||(2758908-2759124)
chr3 (22-255)||(2856042-2856266)
chr3 (22-159)||(2768838-2768975)
chr3 (18-64)||(2838831-2838877)
chr3 (189-255)||(2838990-2839056)
chr3 (199-255)||(2768751-2768807)
chr3 (23-63)||(2818422-2818462)
chr3 (199-243)||(2755738-2755782)
[»] scaffold0691 (1 HSPs)
scaffold0691 (24-243)||(6386-6596)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 2807176 - 2806931
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2807176 tgaaatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaa 2807077  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807076 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 2806977  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctttacacaggttct 267  Q
    |||||||| |||||||||||||||||||||||||||| || |||||    
T  2806976 cttcaatgcgaaatgatgcttcgcgcagctgctttacccaagttct 2806931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 2790273 - 2790040
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||  || | |||||||| |   |||| ||||||||| |||||| | |||||||||    
T  2790273 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatcaaa 2790174  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||  ||||||||||||||| ||||| |||||  || |||||||| |||| ||||||||||| ||||||| |||||| ||||||||||||||||||    
T  2790173 gttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatat 2790074  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||||||| ||||||||||||| | |||||||||    
T  2790073 cttcaatgcgaaatgatgcttctctcagctgctt 2790040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 5412814 - 5412601
Alignment:
Q  21 ttgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaa 120  Q
    |||||||||| |||||||||||||||||||||||||||||||| | ||  |||| |||||||||  | |||| ||||||||| |||||| | ||||||||    
T  5412814 ttgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaa 5412715  T
Q  121 agttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgata 220  Q
    |||||||| || ||||||||||||| ||| | |||||   | ||||||| |||||      ||  || ||||||| |||||||||||||| || |||| |    
T  5412714 agttttgatcaagcttgcaatcttgcagactaaagat---ctgcatccaagagga------ttgaccctatgcattagccgatggtattcgtcaatgaca 5412624  T
Q  221 tcttcaatgtgaaatgatgcttc 243  Q
    ||||||||| |||||||||||||    
T  5412623 tcttcaatgcgaaatgatgcttc 5412601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 2748904 - 2748680
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||  || |  ||||||||  | || | |||||||||||||||||| |||||||||    
T  2748904 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaa 2748805  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||   | ||||||||||||  || | |||||||   ||||| ||||||| |||      || ||||||| |||||| |||||||||| |||| ||    
T  2748804 gttttgatttgccttgcaatcttgccgactaaagatcc---gcatctaggaggattgg------ccctatgcattagccgaaggtattcatcaatgacat 2748714  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||||||| ||||||||||||| | |||||||||    
T  2748713 cttcaatgcgaaatgatgcttctctcagctgctt 2748680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 2797267 - 2797055
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||  || | ||||||||     |||| ||||||||| || ||| | | ||||||     
T  2797267 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatcaat 2797168  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||  || |||||||||||| ||| | |||||   |||||||| ||||||      |  ||| ||||||||||| || |||||||||| |||| ||    
T  2797167 gttttgattagacttgcaatcttgcagactaaagat---ccgcatcccggagga------taggccctatgcatcagctgaaggtattcatcaatgacat 2797077  T
Q  222 cttcaatgtgaaatgatgcttc 243  Q
    |||||||| |||||||||||||    
T  2797076 cttcaatgcgaaatgatgcttc 2797055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 2759124 - 2758908
Alignment:
Q  18 catttgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaat 117  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||  ||  | || ||| |||||| | ||||  ||||| || |  ||||| |||||    
T  2759124 catttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaat 2759025  T
Q  118 caaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatg 217  Q
    |||||||||||   |||||| |||||||| ||||  ||||   ||||  |||||||||      || ||| |||| ||||||||| ||||||| || ||     
T  2759024 caaagttttgattgggcttgtaatcttgttgaatacagat---ccgctaccaggagga------ttggccgtatggatcagccgaaggtattcgtcaatt 2758934  T
Q  218 atatcttcaatgtgaaatgatgcttc 243  Q
    |||||||||||| |||| ||||||||    
T  2758933 atatcttcaatgcgaaacgatgcttc 2758908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 2856042 - 2856266
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    ||||||||| |||||||||||||  ||||||||||||||||| | ||  |||| ||| |||||  | ||||  ||||| || | |||| | |||||||||    
T  2856042 tgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatcaaa 2856141  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatat 221  Q
    |||||||   |||||| || ||||| || | |||||||||    |||| ||||| |||      || |||| |||| |||| |||||||||| |||| ||    
T  2856142 gttttgattcggcttgtaaccttgttgactaaagatccacg---tccatgaggattgg------ccctatgtatcaaccgaaggtattcatcaatgacat 2856232  T
Q  222 cttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||||||| ||||||||||||| | |||||||||    
T  2856233 cttcaatgcgaaatgatgcttctctcagctgctt 2856266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 2768975 - 2768838
Alignment:
Q  22 tgaaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaa 121  Q
    |||| |||| ||| |||||||||| ||||||||||||||||| | ||  |||| |||||||||  | ||||   |||| || | |||||| ||| |||||    
T  2768975 tgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaatgcaattttatgacggggagtcaaa 2768876  T
Q  122 gttttgaccaggcttgcaatcttgtagaatgaagatcc 159  Q
    |||||||  ||||||||||||||| ||| | |||||||    
T  2768875 gttttgattaggcttgcaatcttgaagattaaagatcc 2768838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 2838831 - 2838877
Alignment:
Q  18 catttgaaatttgtaagttatacctctcacttctttccttgattccg 64  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||    
T  2838831 catttgaaatttgaaagttatacctctcgcttcttttcttgattccg 2838877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 2838990 - 2839056
Alignment:
Q  189 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    ||||||| || ||| |||||||||| |||| |||||||||| ||||||||||||| | |||||||||    
T  2838990 tatgcattagtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2839056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 2768807 - 2768751
Alignment:
Q  199 ccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctt 255  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||| | |||||||||    
T  2768807 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 2768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 2818462 - 2818422
Alignment:
Q  23 gaaatttgtaagttatacctctcacttctttccttgattcc 63  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  2818462 gaaatttggaagttatacctctcgcttctttccttgattcc 2818422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 2755782 - 2755738
Alignment:
Q  199 ccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttc 243  Q
    |||| |||||||||| |||| |||||||||| |||||||||||||    
T  2755782 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 6386 - 6596
Alignment:
Q  24 aaatttgtaagttatacctctcacttctttccttgattccgcaaaccgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagt 123  Q
    ||||||| ||||||||||| |||||||| ||||||||||| | ||  |||| ||| |||||  | |||| ||||||||| |||||  ||| |||||||||    
T  6386 aaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagt 6485  T
Q  124 tttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatatct 223  Q
    |||||  |||||| |||||||| ||| | | |||   ||||||||||||||       || ||| |||| ||||||||| |||||||||| || | ||||    
T  6486 tttgattaggcttacaatcttgcagactaatgat---ccgcatccaggagg------gttggccctatggatcagccgaaggtattcatcaataacatct 6576  T
Q  224 tcaatgtgaaatgatgcttc 243  Q
    |||||| |||||||||||||    
T  6577 tcaatgcgaaatgatgcttc 6596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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