View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7145_high_14 (Length: 255)

Name: NF7145_high_14
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7145_high_14
NF7145_high_14
[»] chr5 (2 HSPs)
chr5 (1-243)||(3289998-3290238)
chr5 (5-57)||(43432490-43432542)
[»] chr4 (2 HSPs)
chr4 (5-63)||(7757503-7757561)
chr4 (75-108)||(37098092-37098125)
[»] chr7 (2 HSPs)
chr7 (39-122)||(10407745-10407828)
chr7 (6-104)||(7512593-7512691)
[»] chr2 (1 HSPs)
chr2 (39-104)||(37494927-37494992)
[»] chr1 (2 HSPs)
chr1 (27-98)||(1519764-1519834)
chr1 (37-73)||(11185338-11185374)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3289998 - 3290238
Alignment:
Q  1 tttggtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacacttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3289998 tttggtgtatatttgaacataaagcgtagttaacgaatatcatgtatatttgaacacaatttgaatgattaattgatatcatctatatttgaacacttga 3290097  T
Q  101 aaatcatgattaataacatttagggacgattaatgagttgtgatagattgttatattcannnnnnnnnnnnnnaaagattgttatattcattaatcacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||    
T  3290098 aaatcatgattaataacatttagggacgattaatgagttgtgatagattgttatattca--ttttcttttttaaaagattgttatattcattaatcacca 3290195  T
Q  201 ccgaatgtaaccacatattttgaatgtgttaatcatccatatt 243  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  3290196 ctgaatgtaaccacatattttgaatgtgttaatcatccatatt 3290238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 43432490 - 43432542
Alignment:
Q  5 gtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacac 57  Q
    ||||||||||||||||| | ||| ||||| ||||||||||||||||| |||||    
T  43432490 gtgtatatttgaacatacatcgtggttaatgaatatcatgtatatttgaacac 43432542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 7757561 - 7757503
Alignment:
Q  5 gtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttg 63  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||||||| | ||||||    
T  7757561 gtgtatatttgaacacaaatcgtagttaatgaatatcatgtatattttaagataatttg 7757503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 37098125 - 37098092
Alignment:
Q  75 aatatcatctatatttgaacacttgaaaatcatg 108  Q
    |||||||| |||||||||||||||||||||||||    
T  37098125 aatatcatttatatttgaacacttgaaaatcatg 37098092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 10407745 - 10407828
Alignment:
Q  39 atcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacacttgaaaatcatgattaataacattta 122  Q
    ||||||||||||  ||||||||||| ||| ||||| |||||||| ||||||||||| | | || || |||||||||||| ||||    
T  10407745 atcatgtatattcaaacacaatttggatggttaataaatatcatgtatatttgaacgcctaaacattatgattaataacgttta 10407828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 7512593 - 7512691
Alignment:
Q  6 tgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacacttgaaaat 104  Q
    |||||||||||||| ||| ||| ||||| | ||||||  ||||||| ||||||||||  ||| |||||| |||| || ||||||||| || ||||||||    
T  7512593 tgtatatttgaacacaaatcgtggttaagggatatcacatatatttgaacacaatttagatggttaattgatattatgtatatttgaccaattgaaaat 7512691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 37494992 - 37494927
Alignment:
Q  39 atcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacacttgaaaat 104  Q
    ||||||||||||| |||||||||| ||||||||||  ||||| | |||||||||| || |||||||    
T  37494992 atcatgtatatttgaacacaatttaaatgattaatggatatcttatatatttgaaaacctgaaaat 37494927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 1519764 - 1519834
Alignment:
Q  27 tagttaacgaatatcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacactt 98  Q
    |||||||  |||||||||||||||| ||||||| ||  ||||||||| ||||| || |||||||||||||||    
T  1519764 tagttaagtaatatcatgtatatttgaacacaaatttcatgattaatgaatat-atgtatatttgaacactt 1519834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 11185374 - 11185338
Alignment:
Q  37 atatcatgtatattttaacacaatttgaatgattaat 73  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  11185374 atatcatgtatatttgaacacaatttggatgattaat 11185338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University