View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_high_15 (Length: 247)
Name: NF7145_high_15
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 29037113 - 29037336
Alignment:
| Q |
8 |
aaacaaagagcacttctcttacgaaaacaactacaatcatcaatagacaacaaacacaattcacactaaagtgcttcaatggaaacccaacacaaacctg |
107 |
Q |
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| T |
29037113 |
aaacaaagagcacttctcttaccaaaacaactacaatcatcaatagacaacaaacacaattcacactaaagtgcttcaatggaaacccaacacaaacctg |
29037212 |
T |
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| Q |
108 |
tccaaaggatcattccccaattcaagcatttcatcaaaatcaagatccatcatcatctacatcaacatgtccagaacacttcagatggattcatgaagat |
207 |
Q |
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| T |
29037213 |
tccaaacgatcattccccaattcaagcatttcatcaagatcaagatccatcatcatctacatcaacatgtccagaacacttcagatggattcatgaagat |
29037312 |
T |
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| Q |
208 |
ttggaaccatggaagagtacagga |
231 |
Q |
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| T |
29037313 |
ttggaaccatggaagagtacagga |
29037336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 29017280 - 29017472
Alignment:
| Q |
39 |
tacaatcatcaatagacaacaaacacaattcacactaaagtgcttcaatggaaacccaacacaaacctgtccaaaggatcattccccaattcaagcattt |
138 |
Q |
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|||||||||||| || ||||||||||||||||||||||| ||||| ||||||| | ||| ||| || | |||||||||| ||||||||||||||| |
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| T |
29017280 |
tacaatcatcaaaaggcaacaaacacaattcacactaaactgctttaatggaagcatgacaagaacatgccaaaaggatcatcatccaattcaagcattt |
29017379 |
T |
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| Q |
139 |
catcaaaatcaagatccatcatcatctacatcaacatgtccagaacacttcagatggattcatgaagatttggaaccatggaagagtacagga |
231 |
Q |
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| T |
29017380 |
catcaagatcaagatccatcatcatctacatcaacatgtccagagcactttagatggattcatgaagatttggaaccatggaagagtacagga |
29017472 |
T |
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