View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_high_3 (Length: 506)
Name: NF7145_high_3
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 51756144 - 51755663
Alignment:
| Q |
19 |
gttaaatcttggcatgtataccacccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756144 |
gttaaatcttggcatgtataccacccaccttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttct |
51756045 |
T |
|
| Q |
119 |
cttcccataattcctccgttannnnnnnnaacgtctcaacactttccttgcattctctgtcaatgtcatcttcatc------gtcataataatacaaggt |
212 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51756044 |
cttcccataattcctccgttattttttttaacgtctcaacactctccttgcattctctgtcaatgtcatcttcatcttcatggtcataataatacaaggt |
51755945 |
T |
|
| Q |
213 |
aaacttcatctttccctttgtaactccgtcatcgtcttcaacaacgctgttactaggaacacgcgctggacaagcatcatcatgacgaggttccaacact |
312 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51755944 |
aaacttcatctttccctttgtaactccgtcatcgtcttcaacaacgctgttactaggaacacgcgctggacaagcataatcatgacgaggttccaacact |
51755845 |
T |
|
| Q |
313 |
tccagacctaggtgaggtttatcggaggaagtgtcgtgggaaggaggtaacaattcaggtttaggggttgggatcctccagaagattacggcgagccatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51755844 |
tccagacctaggtgaggtttatcggaggaagtgtcgtgggaaggaggtaacaattcaggtttaggggttgggatcctccagaagatgacggcgagccatg |
51755745 |
T |
|
| Q |
413 |
tccataaatggttgaagaaatcgaagctcaagtagttgaaagctagagtgtcaagtggagaattttctgacatgttcatctc |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51755744 |
tccataaatggttgaagaaatcgaagctcaagtagttgaaagctagagtgtcaagtggagaattttctaacatgttcatctc |
51755663 |
T |
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