View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7145_high_4 (Length: 445)
Name: NF7145_high_4
Description: NF7145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7145_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 3256092 - 3255647
Alignment:
| Q |
1 |
ttttatattgtggttttaggtcttctatgatgatctgactttgtgtcagaggtcttctggttcac---------ttaataatgatggaaacagtttggtc |
91 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3256092 |
ttttatattgttgttttaggtctgctatgatgatctgactttgtgtcagaggtcttctggttcacagcaggcacttaataatgatggaaacagtttggtc |
3255993 |
T |
|
| Q |
92 |
gatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtgga |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255992 |
gatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtgga |
3255893 |
T |
|
| Q |
192 |
gcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcct |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255892 |
gcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcct |
3255793 |
T |
|
| Q |
292 |
gctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatgg |
391 |
Q |
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|||||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3255792 |
gctctctcctcgtgcaacaaatcaacccctcaaaatgtttcgcctcaagtgtcgttttaaagaccacaatcaaaagggtccatttaatgtgacagaatgg |
3255693 |
T |
|
| Q |
392 |
ctagaagcctcaaaacagcgtagtattgaggaagttcatctcactc |
437 |
Q |
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| T |
3255692 |
ctagaagcctcaaaacagcgtagtattgaggaagttcatctcactc |
3255647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 7813983 - 7814076
Alignment:
| Q |
87 |
tggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttc |
180 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||| |||||| ||||| ||||||| || ||||| |
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| T |
7813983 |
tggtggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttc |
7814076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 7871216 - 7871340
Alignment:
| Q |
95 |
agaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagca |
194 |
Q |
| |
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||||||||| |||||| |||||||| ||| ||||||| | ||| |||||||| |||||| ||||||||||||| ||||||| |||||||||| | |
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| T |
7871216 |
agaatcagtagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtggatcc |
7871315 |
T |
|
| Q |
195 |
aactatgttgttcactacctgttct |
219 |
Q |
| |
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|||||| | |||||| |||||||| |
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|
| T |
7871316 |
cactatgctattcactccctgttct |
7871340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 7806893 - 7806822
Alignment:
| Q |
85 |
tttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaact |
156 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||| ||||||| | |||||||| ||| ||||| |
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| T |
7806893 |
tttggtcgatagaataagtgatttaccagatgagttactgctttacattctctcttttctccaaaccaaact |
7806822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 14017655 - 14017785
Alignment:
| Q |
89 |
gtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggt |
188 |
Q |
| |
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||||||||||| || |||||| | ||||||||||||| ||||| |||||||||||||||||||| | ||||||||||| | |||||||||||| ||| |
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| T |
14017655 |
gtcgatagaattagcgatttatcagatgagttattgcggcacatactttgttttctcccaacaaatattgctttcactacatccgttctttcgaaaaggt |
14017754 |
T |
|
| Q |
189 |
ggagcaaactatgttgttcactacctgttct |
219 |
Q |
| |
|
||| ||||||||| | || ||| |||||||| |
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|
| T |
14017755 |
ggaccaaactatgctatttactccctgttct |
14017785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 429
Target Start/End: Original strand, 14020277 - 14020483
Alignment:
| Q |
227 |
gaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac----ccttc |
322 |
Q |
| |
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|||||||||| || ||| |||||||| | ||| | |||||||| ||||||| |||||||| |||||||||||| |||||| || |||| || || |
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| T |
14020277 |
gaagatgaaatcatcaacgattatgatgtcttaccatgcttctgttgcattgtcaatactatcatgctctctcctcatgcaaccaaccaactaaaccctc |
14020376 |
T |
|
| Q |
323 |
aaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgagg |
422 |
Q |
| |
|
|||| |||| ||||||| | || || || | ||| ||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||| |||| |
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| T |
14020377 |
aaaatgtttcgcctcaactttcgttatagataccacaagcaaaatcgtccatttaatgtgacaaaatggctagaagccacaaaagagcgttgtatcgagg |
14020476 |
T |
|
| Q |
423 |
aagttca |
429 |
Q |
| |
|
|| |||| |
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| T |
14020477 |
aacttca |
14020483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 14271406 - 14271579
Alignment:
| Q |
264 |
gcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatca |
363 |
Q |
| |
|
||||||| | |||||| ||| |||| ||||||||| ||||||||| || ||||| |||||| |||| ||||||| | || |||| | || ||| || |
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| T |
14271406 |
gcttctgccacattgtcaatattatcatgctctctcttcgtgcaaccaacaaacccctcaaaatgtttcgcctcaactttcgttttggatgccacaagca |
14271505 |
T |
|
| Q |
364 |
aaagg-gtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttcatctcact |
436 |
Q |
| |
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||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||| |||||| |
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| T |
14271506 |
aaaatagtccatttaatgtgtcaaaatggctagaagccacaaaagagcgttgtattgaggaacttcacctcact |
14271579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 434
Target Start/End: Original strand, 14017848 - 14017982
Alignment:
| Q |
300 |
ctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagc |
399 |
Q |
| |
|
|||||| ||| ||||||||| |||||| ||| ||||||| |||| |||| || ||||| ||||| || |||||||| ||| | ||||||||||||| |
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|
| T |
14017848 |
ctcgtgtaaccaatcaacccctcaaaatctttagcctcaactgtcgctttatggaacgcaagcaaaatagttcatttaatttgaaaaaatggctagaagc |
14017947 |
T |
|
| Q |
400 |
ctcaaaacagcgtagtattgaggaagttcatctca |
434 |
Q |
| |
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| |||||| | | ||||||||||| ||||||||| |
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| T |
14017948 |
cacaaaacgacattgtattgaggaatttcatctca |
14017982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 37997736 - 37997616
Alignment:
| Q |
71 |
aatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaa |
170 |
Q |
| |
|
|||| ||| |||| ||||| |||||||||||| |||||||| |||||||||||| |||| || | |||||| |||| |||||| |||| ||||||| |
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| T |
37997736 |
aatggtggcaacaatttggacgatagaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaa |
37997637 |
T |
|
| Q |
171 |
cagttctttcgaaacggtgga |
191 |
Q |
| |
|
| |||||||| || ||||||| |
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|
| T |
37997636 |
ctgttctttcaaagcggtgga |
37997616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 19317795 - 19317704
Alignment:
| Q |
78 |
gaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactaca |
169 |
Q |
| |
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||||||||| || |||||||| || |||||||| |||||||||||| ||||||| | |||||||||||||||||| |||| |||||| |
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| T |
19317795 |
gaaacagttcagtggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactaca |
19317704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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